Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00197 ATGGAAAATATGGGCGAGATTGATACGAAACCTATTGATTCTGTACAAGCCGGTATCTCTCTATTTGGTGCCATAGGTGATCAGAACAAACACAAGCTCACAGCCAATAATGGGTATGAGAAGGAAAGAGAGGTTCAAGAGTTAGTAAAGGATTTGGCTAATTACAAGGTTCAACTTGAAGCAAAGGATGCAGCTTACATGCAGGCTCTTCTCAAGCTGGAACAACAACAGAAAGCCATCGACGAACTGTCTGAGTTGCTGAAAATTGCGGAAACTGGTAGAGATAAATACGTCAATGAATGCAGCGAAGCTAGATTTCTGCTGGATGAACTTGAACAAAAACTGAACGAAATGACTGAACAATCCTTGGAGACCGAAAAATTCCGAGAGAAACTTCAGGCTGCCGAGAATGAGTTGAAGCTCAGACAAGAGGAGCTTCTTGGGATTGAAACAGAACTTGCTGCCTCTAGAGAATCAGAGGTCAAGGGTATTATAAAAATAGAGTTGCTGGAAAACAAGGCTCACTTGGAAAAGGAGACTACTGTAGATCTCATAAGACGCATTTCAGAACTAAATGAAGCAATTCGTTTGTCAAAATTTGCTGCTAGTGAAGCAGAGAAGGAGATGTCTGCTGCATTATCTGCAAAGGAGACCGAGCTAGAGCTGGCTAAAAAGCAAGTTGTTGAGTTGCACAAGCAATTAGAAGAAATGAGCCAGCAAATAGAAATAGAGATGGAGCGGAATCAATTAAAAGAAGTGAAATTTTCAAATGAAGAAATCGAAAAATTCAAGGACGAGATCGAAACACTTAAGAATCAGTTGGAGAAGAAGAATCTTGAAATGGATGAGATGAGAGAAAGGGAAGCTAATGCGGAGGTTGAGATTGCATTGCTGAAATCTGAGCTTCATAAAGGAAGGTCAAAAGTTGCAGCTGTAGAAGCAGCTGAAGCCAAAGCCAAGAGTGTAACATCTGGTCTTTATCCTGCTGTTCAGGACTTGGCTGCAGAATCAGTCGAAGTTAAGAAGGAGAACATAAAGCTAGAACAGGAACCACTCGGGGCCTATGAAGAAACTGAGAACTCCATACTTGCCAAGCCACTTGTTGAGAGTAACTCTTCAAGCATGGAAGAAGATTTGAATCCTGAAGTCAATGAAAGAAGAAATGAAAGTACCACCATGACAATTACTTTAGAGGAATATCAGTCATCGATTAAGGATATTGACTCAGCCTCTGAACTCTCCTCAGACAAAATTTCCCATCATATCAGTTCGGAGTGCACGGATGAATTGGAAAAGTTGAAGAAGGAACTAGAAGCAGCAAACATAAGAATTGGGGAGTTCAGGTCACGTGCAGAACAGGCTGCCACCAGGGCTGAGATGGCTGAGAAAGCAAAAGAAGCCGTTGAAGACCAGCTGAGAAAATGGCGAGAGCATAAACAAAGGAGAAAGGCTGCTCTTGCTGCCATGAAGGAAGTATCTGCACCGCCAAAATTCAAGCCTCCCATGCATGAAGGCAGCTCCACAACGTACCAGCCTTTAGGTAAGGTTCTTAACTTGAAATTATAA 1566 42.08 MENMGEIDTKPIDSVQAGISLFGAIGDQNKHKLTANNGYEKEREVQELVKDLANYKVQLEAKDAAYMQALLKLEQQQKAIDELSELLKIAETGRDKYVNECSEARFLLDELEQKLNEMTEQSLETEKFREKLQAAENELKLRQEELLGIETELAASRESEVKGIIKIELLENKAHLEKETTVDLIRRISELNEAIRLSKFAASEAEKEMSAALSAKETELELAKKQVVELHKQLEEMSQQIEIEMERNQLKEVKFSNEEIEKFKDEIETLKNQLEKKNLEMDEMREREANAEVEIALLKSELHKGRSKVAAVEAAEAKAKSVTSGLYPAVQDLAAESVEVKKENIKLEQEPLGAYEETENSILAKPLVESNSSSMEEDLNPEVNERRNESTTMTITLEEYQSSIKDIDSASELSSDKISHHISSECTDELEKLKKELEAANIRIGEFRSRAEQAATRAEMAEKAKEAVEDQLRKWREHKQRRKAALAAMKEVSAPPKFKPPMHEGSSTTYQPLGKVLNLKL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 955792 957693 + Carg17946-RA Car10g00197 155099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00197 521 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 243 520 - -
Car10g00197 521 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 4 243 - -
Car10g00197 521 Coils Coil 253 301 - -
Car10g00197 521 Coils Coil 206 251 - -
Car10g00197 521 Coils Coil 423 478 - -
Car10g00197 521 PANTHER EXPRESSED PROTEIN 243 520 - -
Car10g00197 521 PANTHER EXPRESSED PROTEIN 4 243 - -
Car10g00197 521 MobiDBLite consensus disorder prediction 477 521 - -
Car10g00197 521 Coils Coil 330 350 - -
Car10g00197 521 MobiDBLite consensus disorder prediction 368 387 - -
Car10g00197 521 Coils Coil 45 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00197 - - - cmos:111429691 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00197 Car-Chr10:955792 Car16g00921 Car-Chr16:7552948 4.34E-11 dispersed
Car10g00197 Car-Chr10:955792 Car01g01437 Car-Chr1:12381578 2.93E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g597 . . . . . . . . . . Cma10g00210 . Car10g00197 . . . . Bhi02g00288 . . . . . . Cla06g01567 Cam06g1733 Cec06g1793 Cco06g1793 Clacu06g1700 Cmu06g1646 Cre06g2457 . . . . . . . . . . . Bda14g00863 . Bpe15g00592 Bma03g00841 . . Cmo10g00228 . . . . . . Cpe18g00779 . . . . . . . . . . . . . . Lsi06g01442 Csa01g00263 Chy02g02470 Cme02g01858
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010317 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00197 Car_Chr10 FPKM 3.480496 4.451838 45.910683 43.52887 373.887848 344.657349 348.272217 8.263843 7.254136 6.57548