Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00198 ATGAAGGAGAAAGACACTGATCATCATTCATGGCGTCTTCCAATTATCATTTTCTTCATCTTAATCACAGGTACAATTGTCGAGGGACAAGAATTGCAGAGAGACAGAGAAAACTCGCCCTGTTCTTGGTCTGGAATATCCTGCAATCAAATCAATTCCCAAGTGACCGGAATTGACCTTTCAAATGAAGATATTTCCGGCACAATTTTTCATAATTTCTCTGCCTTTCCGGCGCTAACGGACCTCGACCTCTCTAGAAACACTCTCTCTGGTCTAATTCCCGGCGACTTGAACAACTGCAGAAATCTCCGGCGGTTGAATTTGTCGCACAACATCATCGACGACAAGTTGAACTTGTCGGGGTTGGTCAACATCGAGACTCTGGATTTGTCGGTCAACCGGATTTGGGGAGACATACGGTTGAATTTTCCGGGCATTTGCAGAAATTTGATGTTCTTTAATGTTTCCGGTAATAATTTCACTGGTCGGACGGATGACTGTTTTGACGAATGCCGGAATTTGCAGCATGTGGATTTGAGCTCCAACAGATTCAATGGTGGATTGTGGGGTGGGTTGGCGAGGACTCGTTTTTTCTCAGCGTCGGAGAATGAACTTTCCGGCGAGCTATCGCCGGCGATATTTACTGGGGTTTGTAATTTGGAGGTGTTGGACCTGTCAGAGAATAAATTTTCCGGCGGAGTTCCAGTGGAGGTTTCTAATTGTGGGAATTTGTCTTCTTTGAATCTATGGGGGAACCAATTTTCCGGCACAATTCCGGTTGAAATCGGACGAATTTCGGGTTTGCAGAATTTATATCTGGGAAAGAACAATTTTTCCCGGGAAATTCCTGAATCCCTTTTAAGTTTGAACAACTTGGTGTTCCTCGATTTGAGCAAGAACAATTTCGGAGGGGACATTCAAGAAATCTTCGGGAGGTTTACACAGGTGAGATTCCTTGTTCTTCATGGGAATTCTTACACCGGAGGGATTTATTCTTCTGGGATTCTTAAGCTCCCAAGAGTTGCTCGTTTGGATCTGAGTTTCAACAACTTTTCAGGTTCATTGCCTGTAGAAATCTCTGAAATGAAGAGCTTGGAGTTCTTGATTCTTGCATATAACAAGTTCAATGGAATGATTCCATCAGAATATGGGAACTTGCAGAATCTTCAAGCTCTTGATCTCTCATTCAACAACTTAAATGGATCAATCCCAAGTAGCTTTGGGAAATTGACTTCACTCTTGTGGCTAATGCTGGCAAACAACTCCTTGACTGGTGAAATTCCCAGGGAGCTTGGTAATTGCTCGAGCTTGTTATGGCTGAATCTTGCGAACAATAAGCTACATGGGCGCATCCCGGCCGAGCTATCGAACATTGGAAAGAACGCCACAGCGACATTCGAAATGAATCGACGAACCGAGAAGTTCATCGCTGGATCGGGGGAGTGCTTGGCAATGAAGAGATGGATACCAGCTGACTACCCTCCTTTCAGATTTGTTTACACAATTCTTACAAGGAAGAGTTGTAGAAGCATTTGGGATAGATTGTTGAAAGGGTATGGCCTTTTCCCATTTTGCAGCAGAATTAGAACACTGCAAATCTCTGGTTATGTTCAGCTCACTGGGAATCAGTTCAGTGGTGAGATACCAAATGAGATTGGAACGATGAAGAACTTCAGTATGTTGCATTTGAGTTGCAACAATTTCAGTGGGAAGCTCCCTCCACAGTTGGGGAATCTGCCACTGGTTGTTCTAAACGTCTCGGAAAATCATTTTTCGGGCGAGATCCCGACCGAGATCGGAGGCCTGAAGTGCTTGCAGAACCTTGATTTATCATACAACAACTTCTCTGGCATGTTCCCTAGAAGTTTCTTGAACTTGAATGAGCTTAACAAATTCAACATTTCATATAATCCTCTCATAACTGGTGAAGTCATTCCAAGTGGGCAATTCTCAACGTTTGACAAGGACTCATATCTTGGCAATCCTCTTTTGCGCCTACCATCGTTCTTCAACATAACACCGCCGAAGTCACCTGCCAACCCAAGAATGGCAGGATCATCCAAAAGGAACTCGACGCTAATTGGGACGTTGGCTTCCTTATCATTGATCCTTGCTTTCCTAATATTTGGTGCATTTTCTCTTATAGTGTTCTTAATGGTCAGGAACTCGGATGAATCACGAGGATATCTGTTGGACGATATAAAATATATGAAAGACTTCGGCTCGAGTTCTCCCAGCTCGTCACCGTGGTTTTCGGATTCGGTAACGGTGATTCGACTTGACAAAACGGTTTTTACGTATGCTGACATTCTAAAAGCCACAGGAAACTTTTCAGAGGATAGGGTGATTGGTAAAGGAGGATATGGAACAGTTTACAGAGGAATGTTACCTGATGGAAGGCAAGTGGCAGTGAAGAAGCTCCAGAGAGAAGGGAATGAAGGTGAAAGAGAGTTCCAAGCTGAAATGAAGATTCTTACTGGAAATGGCTTCAACTGGCCGCACCCGAACCTTGTTCAACTTTACGGATGGTGTCTTGATGGGTCGGAGAAGATTTTGGTGTATGAGTACATGGAAGGAGGGAGCTTGGAAGATCTCATAGTAGACAGACTTAGACTAAACTGGCAGCGACGTATCGATCTTGCGATCGATGTGGCACGAGCATTGGTATTTCTGCATCACGAGTGCTTTCCTTCTATTGTGCATCGTGATGTGAAGGCGAGTAATGTTCTGCTTGATAAAGACGGTCGAGGACGGGTGACAGACTTCGGGTTGGCCAGAATTATGGATGTAGGAGACAGCCATGTGAGTACCATGGTGGCTGGAACCATTGGTTACGTAGCACCCGAGTATGGACAGACATGGAAAGCTACGACAAAGGGCGATGTGTATAGTTTCGGAGTTTTGGCAATGGAACTTGCTACGGCAAGACGAGCACTGGATGGAGGGGAAGAGTGTCTAGTTGAATGGGCTAAAAGGGTGATGGGAAATGGGAGACAAGGGTTGAGTAGAGCAGTGATACCAGTGGCAGTTTTGGGGTCGGGGCTCGTCGATGGGGCGGATGAGATGTGCGAGCTACTGAAGATTGGGGTGAGGTGCACGAACGAAGCACCAGGGGCGAGACCGAACATGAAGGAAGTGCTAGCTATGTTGATCAATATCATAGGGTTAAGAGGGGGAGATGAATTCAGCCAGATGTTCTCCCCTACTCCATGCATTGATCAAGATTTTGATTGA 3234 45.02 MKEKDTDHHSWRLPIIIFFILITGTIVEGQELQRDRENSPCSWSGISCNQINSQVTGIDLSNEDISGTIFHNFSAFPALTDLDLSRNTLSGLIPGDLNNCRNLRRLNLSHNIIDDKLNLSGLVNIETLDLSVNRIWGDIRLNFPGICRNLMFFNVSGNNFTGRTDDCFDECRNLQHVDLSSNRFNGGLWGGLARTRFFSASENELSGELSPAIFTGVCNLEVLDLSENKFSGGVPVEVSNCGNLSSLNLWGNQFSGTIPVEIGRISGLQNLYLGKNNFSREIPESLLSLNNLVFLDLSKNNFGGDIQEIFGRFTQVRFLVLHGNSYTGGIYSSGILKLPRVARLDLSFNNFSGSLPVEISEMKSLEFLILAYNKFNGMIPSEYGNLQNLQALDLSFNNLNGSIPSSFGKLTSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLHGRIPAELSNIGKNATATFEMNRRTEKFIAGSGECLAMKRWIPADYPPFRFVYTILTRKSCRSIWDRLLKGYGLFPFCSRIRTLQISGYVQLTGNQFSGEIPNEIGTMKNFSMLHLSCNNFSGKLPPQLGNLPLVVLNVSENHFSGEIPTEIGGLKCLQNLDLSYNNFSGMFPRSFLNLNELNKFNISYNPLITGEVIPSGQFSTFDKDSYLGNPLLRLPSFFNITPPKSPANPRMAGSSKRNSTLIGTLASLSLILAFLIFGAFSLIVFLMVRNSDESRGYLLDDIKYMKDFGSSSPSSSPWFSDSVTVIRLDKTVFTYADILKATGNFSEDRVIGKGGYGTVYRGMLPDGRQVAVKKLQREGNEGEREFQAEMKILTGNGFNWPHPNLVQLYGWCLDGSEKILVYEYMEGGSLEDLIVDRLRLNWQRRIDLAIDVARALVFLHHECFPSIVHRDVKASNVLLDKDGRGRVTDFGLARIMDVGDSHVSTMVAGTIGYVAPEYGQTWKATTKGDVYSFGVLAMELATARRALDGGEECLVEWAKRVMGNGRQGLSRAVIPVAVLGSGLVDGADEMCELLKIGVRCTNEAPGARPNMKEVLAMLINIIGLRGGDEFSQMFSPTPCIDQDFD 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 962190 965897 + Carg17945-RA Car10g00198 155100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00198 1077 ProSitePatterns Protein kinases ATP-binding region signature. 783 806 IPR017441 GO:0005524
Car10g00198 1077 ProSiteProfiles Leucine-rich repeat profile. 102 123 IPR001611 GO:0005515
Car10g00198 1077 Pfam Leucine Rich Repeat 605 626 IPR001611 GO:0005515
Car10g00198 1077 Pfam Protein kinase domain 778 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00198 1077 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Car10g00198 1077 ProSiteProfiles Protein kinase domain profile. 777 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00198 1077 Pfam Leucine rich repeat 56 111 IPR001611 GO:0005515
Car10g00198 1077 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00198 - - - cmax:111484984 2071.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00198 Car-Chr10:962190 Car15g00825 Car-Chr15:4698262 1.41E-145 dispersed
Car10g00198 Car-Chr10:962190 Car04g02087 Car-Chr4:17006651 7.60E-152 transposed
Car10g00198 Car-Chr10:962190 Car03g00947 Car-Chr3:7362638 4.77E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89118 PF00069 Pkinase 9.10E-43 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00198 Car_Chr10 FPKM 0.0 0.512147 7.456215 8.482123 42.956604 45.728653 41.170387 2.78381 2.496606 2.430333