Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00201 ATGGATTCGTGGCCACAGAAGTGTGTGTTCCCTGTGACGAATGTTTCTGTCTCCATCGCAATCCTGCAATCGGTTGAGGCAAAGTATGAAGCAGTGGAGAGGACATGGGAGAGTGGAGATCAAGAAGCAGCAGTGGACGGCAATGGGGAGGTGGTTCTTCAAATGGCTTCAACAAAGCACTCATGGGGCCAATCCGAAGACACCCTCGAGTCCATAGTCCATAGTTCACTGTTGAGGAAACGGACACGATCCAACCCAGAAGGCAAAGATGAAACTTTTACGAGTGGGGCTTTTTTAGAATCTCATAGGAGCTTCAAAGCCAAAAATTCCATTGAAGACTTAGCTCCAGATGATGGCTCGGAGGACGAACATAACACGAAGAGGAAAACAAGTGGGAGCTGTTCAATTAGACGAACTCAGTCTGAGAGAAGACGAAGAGATCGGATAAACCAGAAGTTAAAAGATCTTCAAAAGTTGGTGCCAAATAGGAGTAAGACTGATAGAGCTTCACTTTTGGACGACACGATTCAATATTTGAAGCAACTTAAAGCACAAGTTCAGTTCATGTGCAGCATTAGATCAGATGTGCCACAGATGATCGTACCTCTAGGAATGCAGCAGCAGCAGCAGCAGCTTCAAGTGTCGCTGCTCGCAGCTCGTATGGGACTGCTTGACACTGCTTCAATGGCTTCCAGTTCCAGTTCCTTCCCTTGTGCTGCTGCATGTTCTCCGACTCTACTGCCTTCCATCATCTCATCAACAAAGCCAAAATCTAAACTTTCCACCTCTGCTTTCGTCCCTCCAACCGATCCTTTCTGCACTTTTCTGGCACAATCAATGGATATGGATTTGTACAGTAAAATGGTGACACTATATTGCCAAGAAGTGAACAGGACACCTCGGCAGACAAGCAAATTAATGGAATCACAATGTGTAGAAGGGATAGAGGAGGATATGCATCAGAGCTAG 969 46.03 MDSWPQKCVFPVTNVSVSIAILQSVEAKYEAVERTWESGDQEAAVDGNGEVVLQMASTKHSWGQSEDTLESIVHSSLLRKRTRSNPEGKDETFTSGAFLESHRSFKAKNSIEDLAPDDGSEDEHNTKRKTSGSCSIRRTQSERRRRDRINQKLKDLQKLVPNRSKTDRASLLDDTIQYLKQLKAQVQFMCSIRSDVPQMIVPLGMQQQQQQLQVSLLAARMGLLDTASMASSSSSFPCAAACSPTLLPSIISSTKPKSKLSTSAFVPPTDPFCTFLAQSMDMDLYSKMVTLYCQEVNRTPRQTSKLMESQCVEGIEEDMHQS 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 972926 976432 - Carg17942-RA Car10g00201 155103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00201 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Car10g00201 322 MobiDBLite consensus disorder prediction 112 130 - -
Car10g00201 322 MobiDBLite consensus disorder prediction 112 146 - -
Car10g00201 322 Pfam Helix-loop-helix DNA-binding domain 138 183 IPR011598 GO:0046983
Car10g00201 322 Coils Coil 139 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00201 - - - cpep:111779735 490.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00201 Car-Chr10:972926 Car17g00454 Car-Chr17:3140328 1.12E-22 dispersed
Car01g00751 Car-Chr1:4556199 Car10g00201 Car-Chr10:972926 2.89E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012476 0 1 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4146 PF00010 HLH 5.50E-10 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00201 Car_Chr10 FPKM 17.135277 16.779821 2.311581 2.417022 6.689444 6.403129 5.431812 1.229357 1.233281 1.574192