Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00202 ATGGATATCACTGAAGAGCAACGAAAGAGAGCCGAAGCAAACCGTTTAGCTGCCATAGCCAAACGCAAAGCACTGGTTGAATCTTCTAATGGCCAACTACAACGCCAGGACCCATGGAAGCTTTTCAAATGTCGCAAGCTTTCCACTGAGCTAAGTGCTGCCAGTGCAGTCCAATCTTCGAAAAGATTATCCTGTAACAATACCCACTTGCCTGAAAGGTTTCGAGTAAGGCTGGAAATTTCCTCCCCTGATTCGTTCTCGATCACGCCGGAAGCCGTGGAAGGATACTCTTACCCGGGAGAGGAGAATTGCTTCAGGAAATTGAGCGAATTTCTATTCAATGTCACTCATTCTCACTACACACAAATTATAGGCGGAGGAAAGGCTTGTGTCTATAAGCTGAGGGACTATTGTCCTGTTTTGAAATGTTTAAAGAACTCCAAGGACATCGATGTTGAAGAGATACCATGGACTACATTTAATGTGGTTGAGAGACTTTCACATTCATTTACTTTAGGGCGATGGATGCCATGCAGGCCAGAGCATCTGTCAGATGAGAAGGTCGATGAACTAATGCAGAAATTACCTGATCGGTTACTGAATAGACTCTTACCTTTCCAACTTGATGGTGTAAGATTTGGCTTGCAGAGGGGTGGCCGATGTTTGATAGCTGATGAAATGGGTCTTGGGAAAACACTGCAGGCTATTGCAATTGCTAGCTGCCTCATGGATGAAGAGGGTTCAATGCTCGTTGTTTGCCCTGCTGTTTTACGTTTTTCTTGGGCTGAAGAACTAGAGCGTTGGCTTCCATTTTGTTTGCCTTCTGATATTCATCTTGTTTTTGGTCATCTGGACAATCCTTGCTATTTATCAAAATTCCCGAAAGTGGTGGTAATATCATACACGATGCTTCACCGTTTATGTAAGAGCATTCTTCAGCAGAAGTGGTCTTTATTGATTGTTGATGAATCTCATCACGTAAGATGTGCCAAGAAGTCATCTGAATCAGAAGAGATAAAGGCAGTTCTTGATTTAGCAACAAAGGTCCAGCATATTATTCTTCTATCTGGAACTCCTTCTTTATCAAGGTTGCATCGTGGATTTCTCCAAGTGAATTCTTTTATGGTCTTGCCTGGTTTGCTGGGAAAGACCAAGTATGAGTTTGCAAAAACTTACTGCGATGTCAAATTTGTTCGTACTTCTCAGGGGAAAACTTTTAAGGACTTCTCGAAAGGCATTCGATTAGATGAGTTGAATGTGCTGCTCAAGCAAACTGTTATGATAAGACGTTTGAAAGAGCATGTATTGGTTCAACTACCACCCAAACGCAGGCAGATCATAAGATTGTTGTTGAAAAGTTCTGATATAGTTGGAGCAAAGGCGGCTACTAGGGACATGATCAATGGTGATCAGGATAGAAATGCTGCTGAAAACAGTACAGACGATATTTTGGGGGAAGAGGAACCTGATGATGGTGGAGCTTGCGGAACTGGGAAACTTTCCTTTCATGAACTGGGTGTTGCAAAGCTATCTGGTTTTCGTGAATGGTTTTCTATTCATCCAATTATTTCTGAAGCAGATGGTTTGATGGACTTGGATTTGAAGACCGATTCCCAAAAGATGATCATTTTTGCTCATCATCATAAAGTTCTCGATGGAGTACAAGAACTCATGTGTGAAAAGGGAATCCAGTTTGTTCGCATTGATGGCACAACTCTTGCTCGAGACAGGCAATCAGCTGTGCTGTTATTCCAGTCGTCATCCGAGGTTAAAATTGCTATCATAGGTATTACTGCTGGTGGAGTTGGACTTGATTTCTCTTCAGCACAAAATGTTGTGTTTTTGGAATTGCCTCAGTCACCGTCGTTGATGCTTCAGGCCGAGGATAGAGCTCACAGGCGAGGGCAGACCAAGGCAGTCAACATATACATTTTCTGTGCTAAGGATACGATAGATGAGTCTCATTGGCGAAAATTGAACAAGAGTTTGCGCTGCGTTACCTCAACTACTGATGGAAAATATGATGCAATTCAAGAAATAGCGGTAGAACGTGTTTCTTATCTAGAAGCATGTGGCAGAAGTGGTACAAGTTCTGAGAGTCAGATGAACTCAGCAACATGCATTAAACTCTCCTCCAAAATGGCGAGAGCTCAAGGCCATGGCTCTTTGGAGGTTGAAGTTAATGATGAGCTGAATGGCTCTTTTAAGGTTGAAGGAAAAGATGAATTGAATGCTAAGACTGATTATCCACCTGTCCAAAATGATGACATCGACATTACAACTCAAACAGATCAAGTAGCCATTAAGGGTGAAATGTTGTCCGGGCAACTGAACAATGATTCTCTCTCGATGGGAAAATCAGAAGAGAATCTTACTACAGTTGACAATAGAAGTCTTGAAAGTTCTTCCTGTCCTCCATTGGAAAAGCAAGGTGGAGAAAAGGATCAAGCACAGAAGGAAGAGAAGTTATGTTCTGGGACATCAAAAGTTGATAATGGTGAACCCCATCTGATCACTGAGCCTGAAAAAAGTTCCTTGAACCATGTTCATGTTCTGCGATTTGAGATTAGTCAGTATACAGGAAGGGTCCACTTGTATAGATGCATTCCTGGGATAGACTTGCGACCAAGGCCACTGTTTCTTAATTTTCGACCAGAAGAAGTTGAATTGATAGACTGTTCTGTTGATGACAGTGAAAAAACAGATTTCAATTTGGACGCCACACTCTACAAACTAGCTCTTCAAGAATTTCTCAGTGAATGGCGTAAGTTGAGACCCATTGAGCAAAGAAAGTTATATGGAAAACCACTGCAACTTCCTTTGGATATTGAACTGTGCTACTTGAAGGAAAGCATCAACCACAACGCTGATGGAGTGTTGAAGGGTAAGAGTTTGCGGCGGACAACACCAATCGATGACATTAGCCGACCATTACCATCTTCTGCTGTATGGAAACTGGTCCAATTGTGCTGTGGCTCTGGAAAAAGAAAGAAAGAATATCCTCAGGGTTGGACACTGACAGATGAACCTCTTTGTAAACTTTGTCAAACACCATGCCAGGGCATCAATGCAAAGACACCTGAATATTTTGAAGATCTTTTCTGTAATCTTGGCTGTTATGAAGAATACCGCGTTAGGATTAGTAGCACATCCCTCCGTCGGGAACTGTTTCAAATGGAGCATGGTGTCTGCTCAAATTGTCATTTGGACTGTCATAAGCTCGTAAAGCACATAAGACCATTGTCCGTGGAGATGCGGCGCGATTATATTGAGAAAGTAGCACCTAAGTTGGCAAGCCGGAAAAATTTGCTTGAAAAGCTTGTTAATAATCCAACTGAGGGCAACGCGTGGCATGCTGACCACATTGTTCCTGTTTACCGAGGTGGAGGTGAATGCAGGCTAGAGAATATGAGGACCCTGTGTGTGGCATGTCATTTTGATGTTACCGCTGAGCAACGTGCTGAACGACGATTAGTTCGGCTCAAAGCTAAGAAGCAACTTAGAGACACTATCACTGATATCAAGAAAAGTGAAAATACTGAAAGGATAGATAACGACATTCAGAATCGAGTGCACGATGCGCAAGAGAATGTACTTGATGAACAGCTAATCTTAGTGAAGGTTCCTGGAAGTGCTTACTCCAAAGACGACTGCTTGGACAATAATACAGAGGGTCCCGAAGAGTCCACAGCAGTTTAG 3699 42.55 MDITEEQRKRAEANRLAAIAKRKALVESSNGQLQRQDPWKLFKCRKLSTELSAASAVQSSKRLSCNNTHLPERFRVRLEISSPDSFSITPEAVEGYSYPGEENCFRKLSEFLFNVTHSHYTQIIGGGKACVYKLRDYCPVLKCLKNSKDIDVEEIPWTTFNVVERLSHSFTLGRWMPCRPEHLSDEKVDELMQKLPDRLLNRLLPFQLDGVRFGLQRGGRCLIADEMGLGKTLQAIAIASCLMDEEGSMLVVCPAVLRFSWAEELERWLPFCLPSDIHLVFGHLDNPCYLSKFPKVVVISYTMLHRLCKSILQQKWSLLIVDESHHVRCAKKSSESEEIKAVLDLATKVQHIILLSGTPSLSRLHRGFLQVNSFMVLPGLLGKTKYEFAKTYCDVKFVRTSQGKTFKDFSKGIRLDELNVLLKQTVMIRRLKEHVLVQLPPKRRQIIRLLLKSSDIVGAKAATRDMINGDQDRNAAENSTDDILGEEEPDDGGACGTGKLSFHELGVAKLSGFREWFSIHPIISEADGLMDLDLKTDSQKMIIFAHHHKVLDGVQELMCEKGIQFVRIDGTTLARDRQSAVLLFQSSSEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTKAVNIYIFCAKDTIDESHWRKLNKSLRCVTSTTDGKYDAIQEIAVERVSYLEACGRSGTSSESQMNSATCIKLSSKMARAQGHGSLEVEVNDELNGSFKVEGKDELNAKTDYPPVQNDDIDITTQTDQVAIKGEMLSGQLNNDSLSMGKSEENLTTVDNRSLESSSCPPLEKQGGEKDQAQKEEKLCSGTSKVDNGEPHLITEPEKSSLNHVHVLRFEISQYTGRVHLYRCIPGIDLRPRPLFLNFRPEEVELIDCSVDDSEKTDFNLDATLYKLALQEFLSEWRKLRPIEQRKLYGKPLQLPLDIELCYLKESINHNADGVLKGKSLRRTTPIDDISRPLPSSAVWKLVQLCCGSGKRKKEYPQGWTLTDEPLCKLCQTPCQGINAKTPEYFEDLFCNLGCYEEYRVRISSTSLRRELFQMEHGVCSNCHLDCHKLVKHIRPLSVEMRRDYIEKVAPKLASRKNLLEKLVNNPTEGNAWHADHIVPVYRGGGECRLENMRTLCVACHFDVTAEQRAERRLVRLKAKKQLRDTITDIKKSENTERIDNDIQNRVHDAQENVLDEQLILVKVPGSAYSKDDCLDNNTEGPEESTAV 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 977968 991406 + Carg17941-RA Car10g00202 155104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00202 1232 Pfam HNH endonuclease 1115 1146 IPR002711 GO:0003676|GO:0004519
Car10g00202 1232 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 528 681 IPR001650 -
Car10g00202 1232 MobiDBLite consensus disorder prediction 790 805 - -
Car10g00202 1232 MobiDBLite consensus disorder prediction 812 827 - -
Car10g00202 1232 Coils Coil 3 23 - -
Car10g00202 1232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 377 IPR014001 -
Car10g00202 1232 MobiDBLite consensus disorder prediction 790 835 - -
Car10g00202 1232 Pfam Helicase conserved C-terminal domain 533 635 IPR001650 -
Car10g00202 1232 Pfam SNF2-related domain 221 453 IPR000330 GO:0005524|GO:0140658
Car10g00202 1232 MobiDBLite consensus disorder prediction 468 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00202 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-] - csv:101216304 2076.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01349 Car-Chr6:9663721 Car10g00202 Car-Chr10:977968 1.43E-63 dispersed
Car10g00202 Car-Chr10:977968 Car04g00912 Car-Chr4:5193744 1.03E-35 dispersed
Car10g00202 Car-Chr10:977968 Car02g01056 Car-Chr2:7336214 6.90E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010723 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4147 PF00176 SNF2_N 8.90E-25 CL0023 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00202 Car_Chr10 FPKM 0.150463 0.20197 0.0 0.046964 0.036635 0.015225 0.093947 0.028831 0.0 0.0