Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00205 GATCAGGCTGTCATAAGCAAAGGCAACCATTTGGAGCAAAGGGAAAGGTTGGGGCTAAGTCGGGCACCCAAGCCACGGTCCTCGCGCGCCCCACATCCTGAGCCAACCAACTCACTTCAGAAAGTTGAGGTGGAAAAGGTGAAACAAGAGGATGCTCTTTCAGATTTGAGCAATATATTGGGAGAGCTTAAAGGAATGGCTGTTGATATGGGAACTGAACTAGACAGACAAAATAAGGCTCTGGATAACTTGTTTGACGACGCGGACGAGATCACGGTTCGTGTTGATAATGCTAATCGGCGTGCTCGGCACTTGCTTAGAAAGTAG 327 48.62 DQAVISKGNHLEQRERLGLSRAPKPRSSRAPHPEPTNSLQKVEVEKVKQEDALSDLSNILGELKGMAVDMGTELDRQNKALDNLFDDADEITVRVDNANRRARHLLRK 108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 993235 994305 - Carg17938-RA Car10g00205 155107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00205 108 MobiDBLite consensus disorder prediction 1 43 - -
Car10g00205 108 Coils Coil 39 59 - -
Car10g00205 108 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 48 105 IPR000727 -
Car10g00205 108 Coils Coil 81 108 - -
Car10g00205 108 MobiDBLite consensus disorder prediction 8 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00205 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101205328 195.667
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00205 Car13g00924 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00205 Car-Chr10:993235 Car13g00924 Car-Chr13:9512034 2.94E-33 dispersed
Car01g00756 Car-Chr1:4573413 Car10g00205 Car-Chr10:993235 4.21E-31 wgd
Car10g00205 Car-Chr10:993235 Car11g00173 Car-Chr11:971346 2.99E-58 wgd
Car10g00205 Car-Chr10:993235 Car18g01029 Car-Chr18:10644607 4.78E-35 wgd
Car10g00205 Car-Chr10:993235 Car04g01730 Car-Chr4:9914376 1.66E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00205 Car_Chr10 FPKM 0.866259 0.597074 1.189238 1.463439 3.2083 3.267585 2.90818 1.598649 2.104829 1.786769