Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00207 ATGGAAGCTAATCTAGCATCAAGACATGTTTGCAAGCTCTGTAATAAGAGCTTTGCTTGTGGGAGATCCTTGGGAGGGCATATGAGGTCTCATTTGACCAATAACTTAGTTGATTCTGATGAGAAACATAGCAGAACAAGCCTTCAATTTGCTGATTTCAGTGCTGGAAGCGTATCAAACATGGAGGAGGAGGAGGTTGATATGGAAGGTGGAAATCTAGCTGGGTTTGGTTATGGTCTTAGAAAGAATCCCAAAAAGACTCAGAAACTTGAGTTTTTAAGTGAAGAATCTTCACTCCAAGACAAGTTCTGCAGGGAATGTGGTAAAGGGTTTCAATCATGGAAGGCTCTGTTTGGTCACATGAAATGCCATTCTGAAAGAGTTGTTTCCAGTAGTCAAGAGCTGGAAGAACCAGATTCCCATATCACTGATGCTAAACAGAAGCTGGTGATGGATATCCAATCTGATAATGAAATTGAAGCTCCTAACAACAAGAGAAAAAGATCAAGAAGAAGAAGAACAGCCCAAATGGGCACGGAAAATTCATTAACTTCCTTCTCTTTTGCCACTGATTCCTCTGTTTTTGAAATCCAGCAAGAACAAGAAGTTGCCATCTCCTTGATGTTGCTTTCCATGGACGTGGGGAATTGGGTTGGTTTCAATTCTCCAGTTGAGTCCTCAGATAACAATTCAAAGTTTCTTGATACCCCATCTGCCGTTGAGAGCAAAACCTCTGTTTCCAATAAACTCAAGGCGAAGAAAATGGAGTCTGAAGTGAAGAAACCAGAGCAAAGTTCTTCTGCGTTTATGAACAAGGGAAAGATGATAGATCAAAGAAGTGGATCTAAATCTTTCCCCCCAAAAAACGACCAAAACCAAGCTAGATTCAGCTCTGATATGATCGCAAAATCCGGAAAGAAGACATTAGCAGAGTTTTGGGATTCAAAAATCTGCAAGAAACCCAAAAAGAGAAGCAAATTTGAGTGTGATATTTGCAATAAGATCTTCCACTCATATCAAGCACTTGGTGGGCATAGAGCAAGCCACAAGAAGCTAAAGGGTTGTTTCGTTGAGTCAGTCATGGAAGAAGACGAAGAAGAAGAAATAGACAGCGAGAGCAGTGCAGAAATGGCGATTTCTGCATACCCAACAGCCGAAAGCAAGCTTGCGAAAGGCCTCAACAATGGCGAAATGGGTTATCAGATTCCAAAAAAGAGCAGCAACCACAAGTGCCCAATTTGCGAGAAAGTGTTCGCATCAGGTCAAGCACTTGGTGGGCATAAAAGATCTCATTTGATCAGTGGATTAAAAAGCAGAGCAACAATTCAAATTCAAAAACAAGTCCCAGAAATCAGGAGGTTTCTGGACCTGAATCTTCCTCCTGAACCAGTCGAAATAGAAAACAAGAACCACAATTTAGCATCATTAAAGCACCCATGGTGGGCTGCAGCTAATGAACACAAGCACGAGGCTCTTGTGAATGTGGGATTTCATATCTAA 1500 41.47 MEANLASRHVCKLCNKSFACGRSLGGHMRSHLTNNLVDSDEKHSRTSLQFADFSAGSVSNMEEEEVDMEGGNLAGFGYGLRKNPKKTQKLEFLSEESSLQDKFCRECGKGFQSWKALFGHMKCHSERVVSSSQELEEPDSHITDAKQKLVMDIQSDNEIEAPNNKRKRSRRRRTAQMGTENSLTSFSFATDSSVFEIQQEQEVAISLMLLSMDVGNWVGFNSPVESSDNNSKFLDTPSAVESKTSVSNKLKAKKMESEVKKPEQSSSAFMNKGKMIDQRSGSKSFPPKNDQNQARFSSDMIAKSGKKTLAEFWDSKICKKPKKRSKFECDICNKIFHSYQALGGHRASHKKLKGCFVESVMEEDEEEEIDSESSAEMAISAYPTAESKLAKGLNNGEMGYQIPKKSSNHKCPICEKVFASGQALGGHKRSHLISGLKSRATIQIQKQVPEIRRFLDLNLPPEPVEIENKNHNLASLKHPWWAAANEHKHEALVNVGFHI 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1001194 1002693 - Carg17936-RA Car10g00207 155109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00207 499 MobiDBLite consensus disorder prediction 152 180 - -
Car10g00207 499 MobiDBLite consensus disorder prediction 225 246 - -
Car10g00207 499 MobiDBLite consensus disorder prediction 225 295 - -
Car10g00207 499 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Car10g00207 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Car10g00207 499 ProSitePatterns Zinc finger C2H2 type domain signature. 411 431 IPR013087 -
Car10g00207 499 MobiDBLite consensus disorder prediction 247 261 - -
Car10g00207 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 409 431 IPR013087 -
Car10g00207 499 Pfam C2H2-type zinc finger 8 32 - -
Car10g00207 499 Pfam C2H2-type zinc finger 104 125 - -
Car10g00207 499 Pfam C2H2-type zinc finger 327 351 - -
Car10g00207 499 Pfam C2H2-type zinc finger 409 432 - -
Car10g00207 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 327 354 IPR013087 -
Car10g00207 499 ProSitePatterns Zinc finger C2H2 type domain signature. 329 349 IPR013087 -
Car10g00207 499 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Car10g00207 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 125 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00207 - - - mcha:111006797 744.577
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00207 Car11g00174 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00418 Car-Chr1:2403892 Car10g00207 Car-Chr10:1001194 8.07E-06 dispersed
Car06g00806 Car-Chr6:6217335 Car10g00207 Car-Chr10:1001194 4.74E-11 dispersed
Car10g00207 Car-Chr10:1001194 Car13g00922 Car-Chr13:9504396 7.42E-97 dispersed
Car20g00616 Car-Chr20:3450662 Car10g00207 Car-Chr10:1001194 7.57E-08 dispersed
Car01g00758 Car-Chr1:4584003 Car10g00207 Car-Chr10:1001194 8.88E-20 wgd
Car10g00207 Car-Chr10:1001194 Car11g00174 Car-Chr11:1006907 0 wgd
Car10g00207 Car-Chr10:1001194 Car18g01027 Car-Chr18:10635256 2.65E-19 wgd
Car10g00207 Car-Chr10:1001194 Car04g01731 Car-Chr4:9920694 4.76E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g613 . Blo16g00175 . . . . . . . . . . Car10g00207 Car11g00174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00587 . . . . . . . . . . Cpe18g00770 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002585 2 2 1 2 2 1 4 1 1 1 1 1 4 2 2 4 1 0 4 1 2 2 2 2 2 2 2 4 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4148 PF13912 zf-C2H2_6 5.70E-11 CL0361 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00207 Car_Chr10 FPKM 0.430642 0.0 1.107574 0.770792 0.0 0.0 0.0 0.905968 0.866852 0.821201