Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car10g00215 | ATGGCGGATTTCCCTCCCCACTTCCAGACCTTCATCTCCCCTCATTCAATGGACGATCCTAGTCTCCACCTCCTCCCTCCTCCCTACTCTGTTCCACCCAACCCACCTCCCAATTTCACCAACTTCTTCCCATTCTCCGGCGACCCCTTCTTCCCCCACCAACCACCACCGCAGTTTCCACCACCAAATCCGCCCGAACCCACCTCCAGCTTCCCACTTTTTCCCTCCCAAACTGCTCCCCCACCACCACTCTCTGAATTCCACGACATCAAGAAGAGAAAATCCATGGATGTTTCAGAAAGCAGCTCTGGAATCTCAACTCCCCAACTCTCTGAAACAGGGTTCAACACAAAACAAAATTCAAGAAAAGGGAAGAGACTGAAAAGAACAGAGATAGAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTTCATGTTAGAGCAAGAAGAGGGCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGCAAAATCAATGAACGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGGATGGCAGTCATGTTGGATGAGATAATTAATTATGTTCAATCTCTGCAGAATCAAGTAGAGTTCCTGTCTATGAAACTGGCTGCAGCTAGCTCTTTGTATGACTTCAACTCGGAGGTCGATGCCATATCAAAACTACAGAGAGCGAAGGCACATGAAGCAAAAGAAGAACTGGAGAGATTGATGAGAGACGGATATGGAGGAATAGGTTGCTTCCACTCAAATTTGCCCCTTTGA | 792 | 47.22 | MADFPPHFQTFISPHSMDDPSLHLLPPPYSVPPNPPPNFTNFFPFSGDPFFPHQPPPQFPPPNPPEPTSSFPLFPSQTAPPPPLSEFHDIKKRKSMDVSESSSGISTPQLSETGFNTKQNSRKGKRLKRTEIEEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSLYDFNSEVDAISKLQRAKAHEAKEELERLMRDGYGGIGCFHSNLPL | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1031717 | 1033052 | + | Carg17928-RA | Car10g00215 | 155117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car10g00215 | 263 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 4 | 262 | IPR024097 | GO:0006355 | |
Car10g00215 | 263 | Coils | Coil | 198 | 218 | - | - | |
Car10g00215 | 263 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 149 | 219 | IPR036638 | GO:0046983 | |
Car10g00215 | 263 | CDD | bHLH_AtBPE_like | 141 | 224 | - | - | |
Car10g00215 | 263 | MobiDBLite | consensus disorder prediction | 26 | 135 | - | - | |
Car10g00215 | 263 | Gene3D | - | 147 | 220 | IPR036638 | GO:0046983 | |
Car10g00215 | 263 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 151 | 201 | IPR011598 | GO:0046983 | |
Car10g00215 | 263 | MobiDBLite | consensus disorder prediction | 99 | 120 | - | - | |
Car10g00215 | 263 | MobiDBLite | consensus disorder prediction | 26 | 42 | - | - | |
Car10g00215 | 263 | Pfam | Helix-loop-helix DNA-binding domain | 155 | 202 | IPR011598 | GO:0046983 | |
Car10g00215 | 263 | SMART | finulus | 157 | 207 | IPR011598 | GO:0046983 | |
Car10g00215 | 263 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 4 | 262 | - | - | |
Car10g00215 | 263 | Coils | Coil | 229 | 249 | - | - | |
Car10g00215 | 263 | MobiDBLite | consensus disorder prediction | 49 | 82 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car10g00215 | Car13g00858 | CCT | |
Car10g00215 | Car18g00037 | CCT | |
Car10g00215 | Car13g00858 | ECH | |
Car10g00215 | Car18g00037 | ECH | |
Car10g00215 | Car11g00253 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car01g00348 | Car-Chr1:1984272 | Car10g00215 | Car-Chr10:1031717 | 9.32E-42 | dispersed | |
Car10g00215 | Car-Chr10:1031717 | Car18g00037 | Car-Chr18:164214 | 2.91E-64 | dispersed | |
Car10g00215 | Car-Chr10:1031717 | Car11g00253 | Car-Chr11:1404661 | 5.89E-90 | wgd | |
Car10g00215 | Car-Chr10:1031717 | Car13g00858 | Car-Chr13:9133842 | 5.29E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4149 | PF00010 | HLH | 4.50E-05 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car10g00215 | - | - | csv:101209353 | 305.449 |