Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00215 ATGGCGGATTTCCCTCCCCACTTCCAGACCTTCATCTCCCCTCATTCAATGGACGATCCTAGTCTCCACCTCCTCCCTCCTCCCTACTCTGTTCCACCCAACCCACCTCCCAATTTCACCAACTTCTTCCCATTCTCCGGCGACCCCTTCTTCCCCCACCAACCACCACCGCAGTTTCCACCACCAAATCCGCCCGAACCCACCTCCAGCTTCCCACTTTTTCCCTCCCAAACTGCTCCCCCACCACCACTCTCTGAATTCCACGACATCAAGAAGAGAAAATCCATGGATGTTTCAGAAAGCAGCTCTGGAATCTCAACTCCCCAACTCTCTGAAACAGGGTTCAACACAAAACAAAATTCAAGAAAAGGGAAGAGACTGAAAAGAACAGAGATAGAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTTCATGTTAGAGCAAGAAGAGGGCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGCAAAATCAATGAACGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGGATGGCAGTCATGTTGGATGAGATAATTAATTATGTTCAATCTCTGCAGAATCAAGTAGAGTTCCTGTCTATGAAACTGGCTGCAGCTAGCTCTTTGTATGACTTCAACTCGGAGGTCGATGCCATATCAAAACTACAGAGAGCGAAGGCACATGAAGCAAAAGAAGAACTGGAGAGATTGATGAGAGACGGATATGGAGGAATAGGTTGCTTCCACTCAAATTTGCCCCTTTGA 792 47.22 MADFPPHFQTFISPHSMDDPSLHLLPPPYSVPPNPPPNFTNFFPFSGDPFFPHQPPPQFPPPNPPEPTSSFPLFPSQTAPPPPLSEFHDIKKRKSMDVSESSSGISTPQLSETGFNTKQNSRKGKRLKRTEIEEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSLYDFNSEVDAISKLQRAKAHEAKEELERLMRDGYGGIGCFHSNLPL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1031717 1033052 + Carg17928-RA Car10g00215 155117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00215 263 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 4 262 IPR024097 GO:0006355
Car10g00215 263 Coils Coil 198 218 - -
Car10g00215 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 219 IPR036638 GO:0046983
Car10g00215 263 CDD bHLH_AtBPE_like 141 224 - -
Car10g00215 263 MobiDBLite consensus disorder prediction 26 135 - -
Car10g00215 263 Gene3D - 147 220 IPR036638 GO:0046983
Car10g00215 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Car10g00215 263 MobiDBLite consensus disorder prediction 99 120 - -
Car10g00215 263 MobiDBLite consensus disorder prediction 26 42 - -
Car10g00215 263 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Car10g00215 263 SMART finulus 157 207 IPR011598 GO:0046983
Car10g00215 263 PANTHER TRANSCRIPTION FACTOR BEE 1 4 262 - -
Car10g00215 263 Coils Coil 229 249 - -
Car10g00215 263 MobiDBLite consensus disorder prediction 49 82 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00215 Car13g00858 CCT
Car10g00215 Car18g00037 CCT
Car10g00215 Car13g00858 ECH
Car10g00215 Car18g00037 ECH
Car10g00215 Car11g00253 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00348 Car-Chr1:1984272 Car10g00215 Car-Chr10:1031717 9.32E-42 dispersed
Car10g00215 Car-Chr10:1031717 Car18g00037 Car-Chr18:164214 2.91E-64 dispersed
Car10g00215 Car-Chr10:1031717 Car11g00253 Car-Chr11:1404661 5.89E-90 wgd
Car10g00215 Car-Chr10:1031717 Car13g00858 Car-Chr13:9133842 5.29E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4149 PF00010 HLH 4.50E-05 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00215 - - csv:101209353 305.449