Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00218 ATGGCCTTTGCAACTACCAGACTATCGGAACTGCCATTGAAGAACTCGCTTCCACTCTTCTCCCACTCGCGTACTCTTCTTTCAACCCCCAATTTGTCTTTGCAGATTCTAAAGACATTCTCTTCTCTCAGAACCCCTAAAACCACTGAGCACAGCGGCAAGAGAATCCCTAAAACTTCCCACAATTCTGGACCCTCTTCTTCTTGGATCTCCAAATGGCCTCCTGGGAGCTCTCGTAATGATCGTAAAGTCGAGAAGAATTTGGCCGAAACAACCCGAGATGATCGAACTGATCGAGCGGAGAATGAGACGCAATTCTTCGATAAGAACGGAGGGGAGAGTGCAGTTGATCGAATTGTGCTTCGCTTACGAAATTTAGGGTTAGAGGAGGATAACGAATTGGATTCTCTCGAGCCAATGCCCGTGACGGGGGAGGAAAGATTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATACCATATTGGATGAAATGGTTCTACCATGGGAGAGAGAGGAGGAAAGGGCTGAAGAGGAGGGCGGTGGAAGAGGGTTGAAAAGGAGAAAGATGAAACCTCCGACATTAGCTGAATTGACAATCGAAGATGAGGAGCTGAGGCGACTGAGGGGAATGGGGATGTTCATTAGAGAGCGGATTAACATACCCAAAGCAGGGATTACGCAAGCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAAGAACTTGTAAGGCTTAAGTTTCACGAGGAGCTTGCACACGACATGAAGACAGCGCACCAAATTGTAGAGCGAAGAACTGGAGGATTGGTTCTGTGGAGGTCTGGAAGTGTTATGGTAGTTTACCGCGGTAGTAACTATGAAGCGCCATCGAAAACTAAGCCCCTTGCAAGGGAGGGGGAAGGGATATCCATCCCAGATGCTTCTTCTGCTGCCATTTCAACAATGAGTGGCAGTGTTGCGGCTTCAGCTCCAGAGACGGCCAAGATGTCAGAGGAAGAGGTTGAATACAACCAACTCCTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTATTGATGCTGATCAGCTTCCTCCGAGTATTCCCGGTTACAAAACTCCTCTAAGGCTTCTCCCAACTGGAATGCGGTCGGGACTTACCAATGCAGAGATGACTGAGATGAGGAAGCTTACGAAATCCTTGCCTTGTCATTTTGCTCTTGGGAGAAACAGGAACCATCAGGGCTTGGCTGTTGCTATACTTAAGCTTTGGGAAAAGAGCCTAGTGGCTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGAATTTAACAGGAGGCATGTTACTATTGAGGAACAAGTATTTTATCGTCGTATATCGTGGGAAGGATTTTCTCCCAACAAGTGTAGCTGCAGCGTTGGCGGAACGGCAGGAATTAACAAAACAGATTCAAGACTTGGAAGAGAAAGCTCGAAGTAAAGTCGTCGAGGCTACTTCATCAAGCGATGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTTTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATATCTGCTGAAGAGCGTCAAAAAATGATTGAAGAAAGCTCGAGAGCGAAAACTGCAAAACTTGTGAGACGAATTGAACATAAGCTAGGTGTTGCCCAAGCTAAGAAACTTAGAGCAGAAAGATTGCTATCTAGAATTGAAGCGTCCATGGTTCTTTCTGGCCCTGATGATGACCAGGAAACAATAACGGATGAGGAACGGGTCATGTTTCGAAAAGTTGGGTTACGAATGACAGCATATTTACCCATAGGCATTCGTGGTGTCTTTGATGGTGTGGTTGAAAACATGCATTTACACTGGAAGCATAGGGAGCTCGTTAAGTTAATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGAAACAGCAAGATTGTTAGAGTATGAGAGTGGTGGGATACTAGTTTCGATCGATCGAGTTCCAAAAGGATATACCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGGCCAAGAAACTTGCTTACGAAGGCAAAAGCATTGAAGCGTTCGGTTGCCATGCAGCGTCACGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAAAACATAGAGGAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATGAGAATAACTGGCCGTCTCAGGATGGACCTGTCTCAGAATCTTTCCAAGACGAGGAAGCATCTTTGTCTGCGATTTCAGAAGATGACAGTGATGAAGATAGCAATGATGAAGACAGTGAGTTCGAAGAGGATAAAGATTTTGATTTTTCCGACTCGGAAAGCACCAATGATCCTCTGAACTAG 2415 45.51 MAFATTRLSELPLKNSLPLFSHSRTLLSTPNLSLQILKTFSSLRTPKTTEHSGKRIPKTSHNSGPSSSWISKWPPGSSRNDRKVEKNLAETTRDDRTDRAENETQFFDKNGGESAVDRIVLRLRNLGLEEDNELDSLEPMPVTGEERFGDLLQREWIRPDTILDEMVLPWEREEERAEEEGGGRGLKRRKMKPPTLAELTIEDEELRRLRGMGMFIRERINIPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHQIVERRTGGLVLWRSGSVMVVYRGSNYEAPSKTKPLAREGEGISIPDASSAAISTMSGSVAASAPETAKMSEEEVEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPLRLLPTGMRSGLTNAEMTEMRKLTKSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEEIRNLTGGMLLLRNKYFIVVYRGKDFLPTSVAAALAERQELTKQIQDLEEKARSKVVEATSSSDDGQAPAGTLAEFYEAQSRWGREISAEERQKMIEESSRAKTAKLVRRIEHKLGVAQAKKLRAERLLSRIEASMVLSGPDDDQETITDEERVMFRKVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYTLIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEEMKKEIGVTEDSDDENNWPSQDGPVSESFQDEEASLSAISEDDSDEDSNDEDSEFEEDKDFDFSDSESTNDPLN 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1048000 1051997 + Carg17925-RA Car10g00218 155120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00218 804 ProSiteProfiles CRM domain profile. 199 295 IPR001890 GO:0003723
Car10g00218 804 MobiDBLite consensus disorder prediction 45 100 - -
Car10g00218 804 Pfam CRS1 / YhbY (CRM) domain 387 471 IPR001890 GO:0003723
Car10g00218 804 Pfam CRS1 / YhbY (CRM) domain 598 684 IPR001890 GO:0003723
Car10g00218 804 Pfam CRS1 / YhbY (CRM) domain 202 284 IPR001890 GO:0003723
Car10g00218 804 MobiDBLite consensus disorder prediction 58 75 - -
Car10g00218 804 ProSiteProfiles CRM domain profile. 385 482 IPR001890 GO:0003723
Car10g00218 804 MobiDBLite consensus disorder prediction 748 765 - -
Car10g00218 804 MobiDBLite consensus disorder prediction 78 100 - -
Car10g00218 804 MobiDBLite consensus disorder prediction 766 794 - -
Car10g00218 804 Coils Coil 715 742 - -
Car10g00218 804 MobiDBLite consensus disorder prediction 738 804 - -
Car10g00218 804 Coils Coil 480 507 - -
Car10g00218 804 ProSiteProfiles CRM domain profile. 595 695 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00218 - - - csv:101219948 1245.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00218 Car11g00248 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00218 Car-Chr10:1048000 Car10g00654 Car-Chr10:3349851 7.39E-168 dispersed
Car04g01776 Car-Chr4:10150077 Car10g00218 Car-Chr10:1048000 1.77E-06 transposed
Car09g00860 Car-Chr9:5266068 Car10g00218 Car-Chr10:1048000 1.53E-09 transposed
Car14g00507 Car-Chr14:2788791 Car10g00218 Car-Chr10:1048000 1.96E-27 transposed
Car14g01599 Car-Chr14:12948266 Car10g00218 Car-Chr10:1048000 2.78E-173 transposed
Car14g01802 Car-Chr14:14102283 Car10g00218 Car-Chr10:1048000 8.10E-07 transposed
Car10g00218 Car-Chr10:1048000 Car11g00248 Car-Chr11:1384503 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00218 Car_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0