Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00229 ATGTATGGTGGTGATGAGGTATCCGCTATAGTTATTGACCTTGGTTCTCACACTTGCAAAGCTGGTTATGCCGGAGAAGATGCTCCCAAGGCTGTTTTCCCCTCCGTTGTTGGATGTATTGATGAAATGGATGTTGATGACACCACAAGTACTGAAAAGAATTCTGGATCTGCTGGAGAATCTAAAAGTAATGCTAAAAGTCTCGATACTGACAAAGGAAAGGGAAAACGCAAACTATACGTCGGTTCTCAAGCTTTAGGGTTCCGCCGTGATAATATGGAGGTACTTTCACCTATAAAGGATGGAGTTGTTGTTGACTGGGATATGGTCGATAGCATATGGGATCATGCATTCAGGGAATGTCTGCTGATTGATGCTCAAGAACATCCCATGCTACTTGCTGAACCATCTTCTAATTCACAACAACAGAGAGAAAGGACGGCTGAGATTATGTTCGAGAAGTACAAAGTTCCTGCATTGTTTTTGGCAAAAAATGCTGTTCTCACGTCATTTGCATCAGGTCGTGCTACATCACTTGTTGTTGACAGTGGCGGTGGATCAACAACTGTTGCCCCGGTACATGATGGCTATGTTCTACAAAAGGCTGTTGTATCTTCTCCTGTTGGTGGAGAATATCTCACTGATTGTTTGTTAAAAAGTTTGGAGAGCAAAGGTATCAAGATAATGCCAAGATACTCTTTCAAGAGAAAGGAAATACGACCAGGAGAATTTCAGATTGTGGAACTTGATTTCCCTAATACAACTGAAAGTTACAAATTATACTCACAGAGGGTAATTGCTAGTGATATTAAAGAATGCGTATGTCGAGCACCAGATACTCCTTATGATGAAAGTGCATATTCAAATATCCCAATGACGCCATATGAACTTCCTGATGGCCAGACAATTGAAATTGGGGCTGATAGATTCAAGATTCCCGATGTTCTGTTTAACCCTTCGTTGGCACAGACTATTCCTGGGGTGGAAAGTTTCACCGAGACAGGTCGCTCAGTTCAGGGATTGCCACATATGGTAATCGAGAGTATAAATAAGTGTGATGTGGATATTCGCAGAGAACTGTTTAGTAGTATACTGCTTGCTGGTGGAACAGCTTCTATGCAGCAGCTCAAAGAACGTCTTGAGAAAGATTTGTTAGAGGAGTCTCCTCAAGCTGCTAGGGTTAAAGTATTGGCGAGTGGAAATGCAACTGAAAGAAGATTCAGCGTCTGGATAGGAGGGAGTATATTGGCCTCTCTTGGTTCATTTCAGCAAATGTGGTTCTCCAAATCCGACTGTTCTGGACGCTTGATCCGGATGTAG 1320 42.42 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGCIDEMDVDDTTSTEKNSGSAGESKSNAKSLDTDKGKGKRKLYVGSQALGFRRDNMEVLSPIKDGVVVDWDMVDSIWDHAFRECLLIDAQEHPMLLAEPSSNSQQQRERTAEIMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVVSSPVGGEYLTDCLLKSLESKGIKIMPRYSFKRKEIRPGEFQIVELDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLAQTIPGVESFTETGRSVQGLPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSDCSGRLIRM 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1086705 1094211 + Carg17914-RA Car10g00229 155131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00229 439 Pfam Actin 4 431 IPR004000 -
Car10g00229 439 MobiDBLite consensus disorder prediction 47 74 - -
Car10g00229 439 MobiDBLite consensus disorder prediction 50 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00229 K11340 ACTL6A, INO80K; actin-like protein 6A - csv:101218049 828.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00229 Car-Chr10:1086705 Car11g01209 Car-Chr11:9827252 6.16E-84 dispersed
Car10g00229 Car-Chr10:1086705 Car04g02545 Car-Chr4:20128173 2.31E-84 transposed
Car10g00229 Car-Chr10:1086705 Car02g00582 Car-Chr2:4437827 1.24E-84 transposed
Car10g00229 Car-Chr10:1086705 Car19g00231 Car-Chr19:2313086 1.97E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g349 . . . . . . . Bma12g00933 . . Cma10g00243 . Car10g00229 . . . . . . . . . . . Cla06g01479 Cam06g1633 Cec06g1696 Cco06g1690 Clacu06g1599 Cmu06g1548 Cre06g2360 . . . . . . . . . Blo15g00369 . . . . . . . . . . . . . . Cpe18g00750 . . . . . . . . . . . . . . Lsi06g01342 . Chy02g02375 Cme02g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00229 Car_Chr10 FPKM 2.645409 2.900471 2.453473 2.113263 5.602424 7.059051 6.436059 5.085995 5.319133 5.713111