Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00236 ATGACTTGGAGGAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTTACTCTTCTGTTTCACGCTGTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCTTACAGTTGGTGGATTATATTTTTTCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACACCTTTGCTTATAGCATTTGAGTTACTTCTTTGTATATACCTCGAGAGCCGATCTGTATTCGTCAGGGTATTGTTCTGTATGCTTATTGAGGCAATTCCATTTCTGCCAGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATCTTAATAGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGTGACGAGGCAATATGGGAGACGCTGCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTGGCTGCTACAATATTTACTCTATTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTGTTTATAAATTTTGGCATTGCCGAGTGCTTTGCCTTTCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAATATTCAAACAAGAGAAAGTTGTTCATCATCAGCAGTAGTTAGATATCTAGACTGGAACAGTGGTCTAATAGCTTATTCAGAGCAGGATCAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAATCCTACTCTGCATGTATTTAGAGGGAACGCCTACGAGTGCAAAAGACCTGCCAATTCCTGTCCTTTTCTCGCCCCTTCTATTATTGCAAGGCGCTGCCGTTATTTATGCTATATCTAGGCTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGCGGATCTAGCGCAGCATTGTATTTCAGTTTTTCTACTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAACACTTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAATACAGCCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGTAGGCATCGCATACTATGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCAATATGTCGTGTTTCTATCGAAGAACGGTTACCGGTATACGATGTATAG 1458 43.69 MTWRRVLKSVQALLAHGLLFCFTLLLVLKLDHFVSYSWWIIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESRSVFVRVLFCMLIEAIPFLPVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATIFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRESCSSSAVVRYLDWNSGLIAYSEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPTSAKDLPIPVLFSPLLLLQGAAVIYAISRLLEKAVLLLRGGSSAALYFSFSTRAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRILCSSCSEKCKKCPICRVSIEERLPVYDV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1111406 1119762 - Carg17907-RA Car10g00236 155138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00236 485 ProSiteProfiles Zinc finger RING-type profile. 438 473 IPR001841 -
Car10g00236 485 Pfam Zinc finger, C3HC4 type (RING finger) 435 478 - -
Car10g00236 485 Pfam Transmembrane Fragile-X-F protein 114 310 IPR019396 -
Car10g00236 485 Pfam Transmembrane Fragile-X-F protein 28 122 IPR019396 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00236 Car11g00236 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00236 Car-Chr10:1111406 Car11g00910 Car-Chr11:5772496 1.41E-09 dispersed
Car04g01965 Car-Chr4:13757793 Car10g00236 Car-Chr10:1111406 0 transposed
Car10g00236 Car-Chr10:1111406 Car11g00236 Car-Chr11:1328627 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00236 - - csv:101215825 891.338