Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00240 ATGGCCGACAACCGTACCCCCACCGGCGCCGCCGCCGCCTCCACGCTCCTCCGGAGGTTCCAAGACCATACCCCTCACTCTCCGCACCTCCTCGGGTTCCTGACCCTCTTCATCACGGCCTCCATCCTGATGTTCCTGACGGGTGTTACCCTAACGGCGGGCATCCTGGCCCTCATATTCCTCACCCCTTTCATCATCTTCACATCACCCATCTGGGTTCCCCTGGCCTTCCTCCTGTTCGCGACGACGGCGGGGGTGTTGTCACTGGGCGGCATTGCGCTTGTTTCTGCTGCGGGGTTCTCGTGGGCGTACAGGTACTTCAAGGGGATGCACCCGCCAGGATCGGAGGGGCTGGAGTACGCGAGGAGCCGAATTTACGACACGGCGAGCCATGTGAAGGATTATGCGCGAGAGTATGGAGGGTATTTGCAGAGTAAGGTGAAAGATGCGGCTCCTGGAGCTTGA 465 60.86 MADNRTPTGAAAASTLLRRFQDHTPHSPHLLGFLTLFITASILMFLTGVTLTAGILALIFLTPFIIFTSPIWVPLAFLLFATTAGVLSLGGIALVSAAGFSWAYRYFKGMHPPGSEGLEYARSRIYDTASHVKDYAREYGGYLQSKVKDAAPGA 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1147204 1147668 + Carg17903-RA Car10g00240 155142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00240 154 Pfam Oleosin 30 140 IPR000136 GO:0012511|GO:0016021
Car10g00240 154 PANTHER F27J15.22 14 154 - -
Car10g00240 154 PANTHER OLEOSIN 14 154 IPR000136 GO:0012511|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00240 - - - cmax:111484904 308.531
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00240 Car11g00226 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00523 Car-Chr5:3044904 Car10g00240 Car-Chr10:1147204 1.23E-12 dispersed
Car10g00240 Car-Chr10:1147204 Car16g00190 Car-Chr16:1089152 7.45E-18 dispersed
Car10g00240 Car-Chr10:1147204 Car11g00226 Car-Chr11:1277703 2.33E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g368 . . . Bda15g00652 Bpe12g00502 . . . . . Cma10g00255 Cma11g00246 Car10g00240 Car11g00226 . . . Bhi02g00005 . . . . . . Cla06g01491 Cam06g1645 Cec06g1705 Cco06g1703 Clacu06g1611 Cmu06g1560 Cre06g2372 . . . . . . . . . Blo15g00363 . . Bpe07g00734 . . . . Cmo10g00272 Cmo11g00253 . . . . . Cpe18g00740 . . . . . . . . . . . . . . Lsi06g01355 Csa01g00357 . Cme02g01771
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010221 1 1 1 1 2 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 0 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00240 Car_Chr10 FPKM 8.63691 11.150964 34.581226 37.176456 95.858147 75.007133 92.492744 32.944958 31.910509 33.63887