Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00243 ATGCCTGTTTTGACTCGGTCTCGGATCATGAACGAAGAACATATTGGTGCAGTTCCAGGTCAAGAAGATAAACAGCAGCTGAATCTTGCACCTAGAAGTCTTCACCATGGATTGAAAGAGAAGATGAAGGCATTAACCCTTTTGTACGAGCAGCAGAAGCTTGCTTCTGCAGCTCTTAAGAGGCCGTCACCAAAAGGGGAAGTTCTAATTGGTGAGCCAAAGCTTGAGAATGTAATGAGAGAAAATGCAATGCCTAATTCCACTGTTACCAGAACTTATGTTCTACCCCAGCTGCCGATGAGTGAAGTGAAGGAGAATGTGGTGGTTGGAGCTGATCGGATTGTCGGGTTTTCGTGCTCGAAAAAGCCGAGTTTGTCGACGAACGTCGCGAGGAAATTGTCGTTAGGGAACTCAATGCCTGTAGTGGAAAGGATGGAGAATGTGGGGTGTAAGAAATTGCAAGAAGTGGAGGAATTGGGAGAAAGCCGGATTTTGGTGTTTGTGAGGCTAAGGCCAATGGCTAAGAAGGAAAAGGAAGTGGGTTCAAGGTGTTGTGTTAAAATAGTGAATGGAAGAGATCTTTACTTGACAGAGTTTGCTAATGAGAATGATTATTTGAGACTTAAGAGGCTTCGTGGGCGTCATTTTAGCTTCGACGCTTCATTTCCGGACACCACCAATCAGCAAGAGGTCTATGCCACCACGACAGCAGAGGTTGTAGAAGCAGTTCTGCAGGGAAGGAATGGTTCTGTGTTCTGTTATGGTGCCACTGGGGCTGGAAAGACATACACAATGCTGGGAACGGTTGAGAGCCCTGGAGTTATGGTTTTGGCTATCAAAGACCTCTTCACCAAGATTAGGCAGAGGAGCTGCGATGGGAACCATACGGTCCACCTCTCTTACATTGAGGTTTACAATGAAACAGTCAGAGATTTGTTGTCCCCAGGAAGGCCATTAGTTCTCAGACAAGACAAGCAGGGCATTGTTGCAGCTGGTATTACACAATATAGAGCTTACTCCACAGACGAAGTGATGGCCTTGCTTCAACGAGGAAACCAAAACCGAACAACCGAACCAACCCGAGTTAACGAAACTTCTTCCCGTTCCCATGCTATATTGCAGGTTACAGTTGAATATCGAGCCAAAGACAGTGGAACGAACATCGTTAACCGAGTCGGGAAGCTCTCATTGATTGATCTCGCCGGGTCAGAGAGGGCACTTGCCACAGATCAAAGAACATTAAGATCTCTTGAGGGAGCAAACATAAACAGATCACTACTCGCTTTAAGTAGTTGCATCAATGCCCTTGTGGAAGGAAAGAAGCACATACCTTACAGGAATTCAAAACTCACCCAACTTCTGAAGGATTCATTAGGAGGAGCTTGTAACACTGTGATGATTGCAAATATTAGCCCAAGCGACTTATCATTTGGTGAAACCCAAAATACACTTCATTGGGCTGATCGTGCTAAAGAGATCAGAACTAAGGTTGCAGAAGAGGAAATAATGAAGCCACCGGAATCTGAATTGGATCAGGCTAAACTACTGCTTGCGTTGCAGAAAGAAAATCATGAATTGCGTGTGCAGTTGGCTCACCAACAACGGAAGTTGCTTACTTTACAGTCCCAATCCCTGGCTGCAGTGGCTTCTCCAACCCCATCTGTTCTAACTCCTCCAACGTCTGTTCGAGAGCTTCACCGCACGGTGAAACGATTAGAAGCAGAGCTTGAGAAGGCAAAGAAAGAGCACATTGTGGAGTTAAAGCACAAAGATGATCATATCAATGAGCTGTTGAAGAAAAGCAAGAAAACAGCAGGGTTGGTGAGAGGAGAAGGCGTAAAGAGGGTAAGGACAAGAACTGGCTTAAGACCAAAGGAGGAGGAGGAGCCAAGCATAGGTGAAGTGAAGAGCCCCAGGTACCGTTTCAAATCACCAGCTCCAACAGCTAAGAAACGAAGCTTTTGGGACATAACAACAGCTAATAGTCCATCTGTTGCCACATTAAATGGAAGGAAGACCAGAAGTCATGTACTTGCAGAGCCTCCTCCTCCTCCTTCTGCTGCTCCCTCTATGCTTCGTCAGCCAGGTTTTTCTCGACAGAAGCCATAG 2109 45.95 MPVLTRSRIMNEEHIGAVPGQEDKQQLNLAPRSLHHGLKEKMKALTLLYEQQKLASAALKRPSPKGEVLIGEPKLENVMRENAMPNSTVTRTYVLPQLPMSEVKENVVVGADRIVGFSCSKKPSLSTNVARKLSLGNSMPVVERMENVGCKKLQEVEELGESRILVFVRLRPMAKKEKEVGSRCCVKIVNGRDLYLTEFANENDYLRLKRLRGRHFSFDASFPDTTNQQEVYATTTAEVVEAVLQGRNGSVFCYGATGAGKTYTMLGTVESPGVMVLAIKDLFTKIRQRSCDGNHTVHLSYIEVYNETVRDLLSPGRPLVLRQDKQGIVAAGITQYRAYSTDEVMALLQRGNQNRTTEPTRVNETSSRSHAILQVTVEYRAKDSGTNIVNRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPSDLSFGETQNTLHWADRAKEIRTKVAEEEIMKPPESELDQAKLLLALQKENHELRVQLAHQQRKLLTLQSQSLAAVASPTPSVLTPPTSVRELHRTVKRLEAELEKAKKEHIVELKHKDDHINELLKKSKKTAGLVRGEGVKRVRTRTGLRPKEEEEPSIGEVKSPRYRFKSPAPTAKKRSFWDITTANSPSVATLNGRKTRSHVLAEPPPPPSAAPSMLRQPGFSRQKP 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1156025 1160024 + Carg17900-RA Car10g00243 155145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00243 702 ProSitePatterns Kinesin motor domain signature. 393 404 IPR019821 GO:0003777|GO:0005524|GO:0007018
Car10g00243 702 MobiDBLite consensus disorder prediction 609 636 - -
Car10g00243 702 Pfam Kinesin motor domain 169 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car10g00243 702 MobiDBLite consensus disorder prediction 609 702 - -
Car10g00243 702 ProSiteProfiles Kinesin motor domain profile. 163 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car10g00243 702 Coils Coil 516 543 - -
Car10g00243 702 MobiDBLite consensus disorder prediction 654 671 - -
Car10g00243 702 Coils Coil 562 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00243 K10401 KIF18_19; kinesin family member 18/19 - csv:101222937 1144.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00243 Car-Chr10:1156025 Car03g00390 Car-Chr3:4649861 8.22E-60 dispersed
Car10g00243 Car-Chr10:1156025 Car11g00228 Car-Chr11:1286060 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00243 Car_Chr10 FPKM 15.667676 16.527496 18.63582 19.829725 36.998264 31.023918 37.887547 18.48209 15.493737 18.845585