Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00245 ATGTTGCAGTCTCAAAGGTTCAATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGACCTTCTGATCGAGTGTTGTGTAGAGTTTATAAACCTCGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCATGAAACTATGCAAGACTCGTTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 495 45.05 MLQSQRFNMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1164343 1167585 - Carg17898-RA Car10g00245 155147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00245 164 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 87 IPR003958 -
Car10g00245 164 MobiDBLite consensus disorder prediction 148 164 - -
Car10g00245 164 MobiDBLite consensus disorder prediction 142 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00298 Car-Chr6:1664127 Car10g00245 Car-Chr10:1164343 1.61E-17 dispersed
Car02g01107 Car-Chr2:7650403 Car10g00245 Car-Chr10:1164343 1.26E-08 transposed
Car10g00245 Car-Chr10:1164343 Car11g00230 Car-Chr11:1293831 3.66E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4155 PF00808 CBFD_NFYB_HMF 3.00E-22 CL0012 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00245 K21751 - csv:101214627 301.212