Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00259 ATGGAACTTCCTCAACCCCGTCCGTTTGGAGCCGAAGGAAGCAAATCAACACATGACTTCCTCTCACTGTACACCCATTCAAGTCCACAGCTAGATCCAAGACCATCTCAACAAGGTGGTTATCTTAAAACACACGATTTCCTGCAACCACAAGAGCGCATAAGGAAGGGCAGTACCAAGGAAGAGACGGATGTGGAGACGCCACCGCCACCAGCACCGCCTCCTTCCGTCGAGCATGTTCTTCCCGGAGGAATCGGGACTTACAGTATAAGTCACGTTTCGTATTTAGATCAGAGGGTTCTGCCAAAGCCGGAAGGGTCAGTTTTCACTGGTGCTCGATCGAGTAGCAGCGCCGAGAGAAATGACGAAAACTCCAACGGAAGTTCTTTCGCGGCGGCCGGAAGTGGATTCACTCTTTGGGAAGAATGTGCATCAAAAAAGGGAAAGACAGGGAAGGAGAATATTGTGGGAGATAGACCCCATGAACCTCGGGCGAGCGCGAGCCAATGGACGGCGTCCGTGGAGCGGCCGTCGCAATCCTCTTCCAACAACCATCACAACGCTTTCAGTTGTCTCTCATCCTCTCAACCGACAGGAACGAAGAACCCAACCTTCATGGAGATGCTCAAGTCGGCCAAGAGTACCTCTCAGGACGAGGAACTTGACGACGATGGTGACTTTGTCATCAAGAAAGAGACCTCTACCGCCAATAAAGGAGGATTGAGGATTAAAGTTGATGGGAACAGCTCTGATCAAAAGGCGAACACTCCTAGATCAAAGCACTCTGCTACTGAACAGCGAAGAAGAAGCAAGATAAACGACAGGCAAGCGTTTCTTCTATTATTCAACTTACAATTTCAAATGCTTAGAGGCCTCATTCCTCATAGTGACCAAAAGAGGGACAAGGCATCTTTCTTATTAGAGGTAGTCGACTACATTCAATTCTTACAAGAAAAGGTCCAAAAGTACGAAGGTTCATACCAAGAATGGAATCGTGAAATGGCAAAACTGGTGCCCTTGAGAAACAAACAACGGAGTGCAGATGTTTATAACGATCAATCTCGAGGGATGAGTAGTGGTTCTGTTCCTGCACTAGTTTTAGCAGCAAAGTTCGTTGAGAAAAATACTCCGTTATCTCCAATTGTTCCTGGGAGTTCACATAATGTGGTAGATTCTGACACAGGTTCTGCTTCTACCTTGAAAGCAGTCGATCGCCATTCTGGAAGAACAAGTAATGCATTGCCGTTTCCCACGATAGTGCCGCCAAAACTCTATGCATCTACACGGGATGGAAGTGTAGTGCCTCAACACCCAAAGCAATTTGCATCTGAAAAGGATCATCCCTCATTACGTCCCCAAATCCGGTCATGTGAGGCCAGGTGCCACAATAGCGATGTTGCTGTTGCAAGTGAAATGCAGAAAGAACAAGATTTGACCATTGAAGGGGGCACCATTAACATCTCAAGTGTATATTCTCAAGGGTTATTAAATACTCTCACCCACGCGTTACAGAGTTCTGGAGTGGATCTATCGCAGTCCAGGATCTCTGTGCAAATAGAACTCGGTAAGCGGGCAACTAGGAGAGCCGTATCTCCAACATCTATTGTTAAGGATGTCGATATTCCCATAAACGATATGGCAACCACGCACTCTAGAGCTTCAGCGACAGAGGATTCTGAGAGAGCCACAAAGAAGCTCAAGACTGCCGAAAGCTAG 1716 47.26 MELPQPRPFGAEGSKSTHDFLSLYTHSSPQLDPRPSQQGGYLKTHDFLQPQERIRKGSTKEETDVETPPPPAPPPSVEHVLPGGIGTYSISHVSYLDQRVLPKPEGSVFTGARSSSSAERNDENSNGSSFAAAGSGFTLWEECASKKGKTGKENIVGDRPHEPRASASQWTASVERPSQSSSNNHHNAFSCLSSSQPTGTKNPTFMEMLKSAKSTSQDEELDDDGDFVIKKETSTANKGGLRIKVDGNSSDQKANTPRSKHSATEQRRRSKINDRQAFLLLFNLQFQMLRGLIPHSDQKRDKASFLLEVVDYIQFLQEKVQKYEGSYQEWNREMAKLVPLRNKQRSADVYNDQSRGMSSGSVPALVLAAKFVEKNTPLSPIVPGSSHNVVDSDTGSASTLKAVDRHSGRTSNALPFPTIVPPKLYASTRDGSVVPQHPKQFASEKDHPSLRPQIRSCEARCHNSDVAVASEMQKEQDLTIEGGTINISSVYSQGLLNTLTHALQSSGVDLSQSRISVQIELGKRATRRAVSPTSIVKDVDIPINDMATTHSRASATEDSERATKKLKTAES 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1233118 1238049 + Carg17884-RA Car10g00259 155161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00259 571 MobiDBLite consensus disorder prediction 104 132 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 547 571 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 1 84 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 429 449 - -
Car10g00259 571 Pfam Helix-loop-helix DNA-binding domain 283 317 IPR011598 GO:0046983
Car10g00259 571 MobiDBLite consensus disorder prediction 148 204 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 554 571 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 48 63 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 239 270 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 166 204 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 109 132 - -
Car10g00259 571 Coils Coil 313 333 - -
Car10g00259 571 MobiDBLite consensus disorder prediction 18 37 - -
Car10g00259 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 316 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00259 - - - csv:101211973 956.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00259 Car13g00889 CCT
Car10g00259 Car11g00210 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00392 Car-Chr1:2237141 Car10g00259 Car-Chr10:1233118 1.98E-69 dispersed
Car05g00407 Car-Chr5:2314773 Car10g00259 Car-Chr10:1233118 2.22E-68 dispersed
Car10g00259 Car-Chr10:1233118 Car11g00210 Car-Chr11:1204578 0 dispersed
Car10g00259 Car-Chr10:1233118 Car13g00889 Car-Chr13:9310472 2.95E-142 wgd
Car10g00259 Car-Chr10:1233118 Car18g00012 Car-Chr18:58943 3.39E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g417 . . Bda06g00506 Bda15g00637 Bpe12g00510 . . Bma12g00955 Cmo13g01097 . Cma10g00277 Cma11g00233 Car10g00259 Car11g00210 Sed08g0307 Cpe20g00094 Cpe04g01439 Bhi02g00050 Tan09g1999 Cmetu02g0900 . Hepe09g0297 . . Cla06g01518 Cam06g1675 Cec06g1736 Cco06g1732 Clacu06g1640 Cmu06g1588 Cre06g2399 . . Cone13ag0021 Cone19ag0030 Lsi02g00145 Csa01g00628 Chy12g01472 Cme12g01914 . Blo15g00347 . . Bpe07g00745 . . . Sed01g2275 Cmo10g00294 Cmo11g00236 Cma13g01054 . Car13g00889 . . Cpe18g00723 Bhi08g01049 Tan05g2320 Cmetu12g0108 . . . . Cla04g01132 Cam04g1185 Cec01g1697 Cco01g1743 Clacu04g1212 Cmu04g1191 Cre01g1490 Lsi06g01384 Csa01g00327 Chy02g02415 Cme02g01800
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004257 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4156 PF00010 HLH 3.70E-05 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00259 Car_Chr10 FPKM 18.86392 18.715918 1.81086 3.620762 14.178746 12.926015 12.537784 1.876272 1.909863 1.256001