Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00264 ATGCAAGACATCCACTCGATCGCCGGAGGAAGTCGGTTGTTCGGTGGCGGGGGTGACCGTCGTCTGCGGCCGCACCTCCACCACCACCAAAACCACCAGGCCTTGAAGTGTCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGACGTTACTGGACTAAAGGCGGCGTCCTCCGTAACGTTCCTGTCGGAGGCGGTTGCCGGAAAACCAAACGCTCCTCCTCGTCGAAGTCCAAGTCCACTCCCGATGTAGCGGCGACGTCTCCTCCTTCTCCTCCTCCTCCTCGTCTTCGCGAACGTAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCTACAACCACCACGGCTGCCGCCGCGGCGACAGAGGCCGTCTCTGCTCCGTCCTCCATTTCAACGTCGGCTCTATTGAGCGTACAGGATAGGAAATTGTTCCCCGCTCCGACTACAAACCCTAATTTCGAAGGTGCGGCGACGGACTGTGGGATTTTCTCGGAAATCGGAAACTTCACGAGCTTGATCACATCGACTAACGAGACATTGGCGTTCGGATTCGGCAATATGGGGGATGTGACGCCGTTTGCGATGAATCATCCGTTTCAAAATCGGGCGGCGAATCAATGGCCGTCACAGAGAATGATGAACGGTAACGATGAGGTGAAGATGCAGGAGATCACAGGCGGAGGAGGAGGAGGAGGGTACATGGATCAGACGGCACAGGTGGATCCATCAGCAGGGCTACAGAATAGCAGATCAAGCAACATTGGATTTGGACCGTTGGATTGGCAATCAAACGGAGATCATCAAGCTCTGTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAGTGGAGTAGTGATCAAGATCAGCCTAATCTGTACCTCCCGTAA 963 53.48 MQDIHSIAGGSRLFGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSTPDVAATSPPSPPPPRLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSISTSALLSVQDRKLFPAPTTNPNFEGAATDCGIFSEIGNFTSLITSTNETLAFGFGNMGDVTPFAMNHPFQNRAANQWPSQRMMNGNDEVKMQEITGGGGGGGYMDQTAQVDPSAGLQNSRSSNIGFGPLDWQSNGDHQALFDLPNAVDQAYWSQNQWSSDQDQPNLYLP 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1260510 1261472 + Carg17879-RA Car10g00264 155166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00264 320 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Car10g00264 320 MobiDBLite consensus disorder prediction 79 136 - -
Car10g00264 320 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Car10g00264 320 MobiDBLite consensus disorder prediction 1 21 - -
Car10g00264 320 MobiDBLite consensus disorder prediction 245 280 - -
Car10g00264 320 MobiDBLite consensus disorder prediction 261 280 - -
Car10g00264 320 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00264 Car13g00729 CCT
Car10g00264 Car18g00159 CCT
Car10g00264 Car11g00205 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00264 Car-Chr10:1260510 Car03g00776 Car-Chr3:6481922 2.67E-33 dispersed
Car10g00264 Car-Chr10:1260510 Car11g00205 Car-Chr11:1181309 9.22E-136 wgd
Car10g00264 Car-Chr10:1260510 Car13g00891 Car-Chr13:9322129 4.23E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4157 PF02701 zf-Dof 4.30E-33 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00264 - - bhj:120071666 446.047