Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00271 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACAGGCCACGGCAAGTTTTCTGTGCAGATCTTGAGCCATTTGCAGAACGCTGCTTGCAGCTCGGTCTGCATCGGAAAATGAAAGCTCGGCGTTTCGCTTCCACTGGATCCGTCGCCGGACTTACTGGCTTTGCCGTCTTGCTTCTCTTTCTACTTTCCAGCTTCAGTTTCACTGCAACAGAAGCCTATGATGCACTTGATCCAAACGGGAACATCACAATCAAGTGGGATGTCATGAGCTGGACCCCAGATGGCTATGTCGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTGCAGCTCCAGGTTGGACATTGGGGTGGACATGGGCAAAGAAAGAAGTAATTTGGAGCATGATGGGAGCCCAAACAACAGAACAGGGCGACTGTTCAAAATTCAAAGGAAATATTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGGTGCAGGAACAAGTAACAAAACTGTCAAACTCCCCAAAAACTTCACCCTTAAAGCCCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAGCCAACCAGATTTGTATCTGGAGATAAAAGAAGAATAACTCAAGCTTTGATGACGTGGAATATTACATGCACCTATTCTCAGTTCCTCGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCAGGTTCTGGTAGCTGTGTGGATCCGGACTCTCCATATTTAGCTTCAGTAGTATCAACTCCTGATAAATCAGGCAGCAATGCGCCCTTGGTTCAGTGTACCAGCCACATGTGCCCGATTCGAGTCCATTGGCACGTGAAGCTGAATTATAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTCGTGGTGCAGCATCCCAATTTTGATAACATTACTAAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTGTGGGGAGTTAAATTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAATCTGAGCTCCTATTTCAGAAAGACCAGAACACTTTCACTTTCGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGCTGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTACTTATGACCATCTTAATATCTTTGACATTACTGTTGAATTTTGCACAATAA 1479 44.9 LSLSLSLSLSLHRPRQVFCADLEPFAERCLQLGLHRKMKARRFASTGSVAGLTGFAVLLLFLLSSFSFTATEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIAAPGWTLGWTWAKKEVIWSMMGAQTTEQGDCSKFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGGAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTRFVSGDKRRITQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSTPDKSGSNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVLPPPDAYPYLPNASSRPAISLLMTILISLTLLLNFAQ 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1291713 1294364 - Carg17872-RA Car10g00271 155173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00271 492 Pfam COBRA-like protein 97 260 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00271 Car13g00898 CCT
Car10g00271 Car13g00898 ECH
Car10g00271 Car11g00197 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00511 Car-Chr4:2888909 Car10g00271 Car-Chr10:1291713 6.89E-77 dispersed
Car10g00271 Car-Chr10:1291713 Car11g00197 Car-Chr11:1137936 0 dispersed
Car19g00552 Car-Chr19:7077321 Car10g00271 Car-Chr10:1291713 2.65E-50 dispersed
Car10g00270 Car-Chr10:1288557 Car10g00271 Car-Chr10:1291713 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00271 - - csv:101213424 906.36