Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00272 ATGCCGCCATTACCGTACCTGCAACTTCGAAGGATTTTAATTCGATCTCTAGCATCGTCTTCTTCGTTATCTGCTAGTTCGTCTTCGAATTTTTTGAATGGATCTGCGAGGAGCTTTCTTTTACATCGGAATTTGACGCCTCTCATCCACCATTTCCGTCATCATGGGGCGGCAGGGATGCTATCTTATCCTTTGCAGCTCTCACTTTCTCATTCGTTCTCCACCGAATCCGGGGAGAATGACGTGGATCAAACATCGCAGTCACTTGCAACCGAGCTTCTTAAGGACCCTGATTTGGATCCTCTTCCTATTACGAAGCGCCTTCAGCTTAGCTTTTCGCATGTTAAACCGAATCCGGAGTTAGTCCTCAATACGCTCAATCTCTCCTCGGAAGCTGGTCGGACGGTGTTGGGGTTTAATGAGTGGTTAGTATCGAATCCTGATTTTCATCACACGGATGAGACTATCTCGTATTTTGTTGATTATTTTGGTCGTAGAAAGGATTTCAATGCGATTCATGAAGTTCTTGTGAAAGGTTTAGGTATCAGTGGGGCTAAAACCCTGCGGTCGTCTATTGATCGGTTCGCTCGTACCGGGCGACCGACAAAGCTGATCTCATTTTTTGAGACGATGGAGAAAAATTACGGGCTTAAGAGGGATAAAGAGTCACTTAGAACGGTGGTGGAGAAGCTCTGTGAAAATGGCTACACGAGCCATGCTGTAAAGATAGTCAAAGACTTGGCGAACGAGTTTTTCCCTGACGAAGCAATATGCGATTCTCTGATCAAAGGATGGTGCGTCAATGGGAAACTAGATGAAGCAAAAAGGCTGGCGGGTGAGATGTACAGGGGAGGGTTTGAGTTAGGGACAACGGCATATAATGATCTACTTGACTGTGCTTGCAAGGTCTGTAGGAAAAAGGATCCGTTCAGGCTTCATTCTGAAGCTGAGGAAATTCTGGTGGAAATGGATTATCGTGGGGTTCCACGAAATGTGGAAACATTCAATGTGCTGATCAATAATTTGTGCAAGATCAGGAAAACTACCGATGCATTAGATTTGTTTCATCAAATGGGGGAGTGGGGATGCCATCCTAATGCTGAAACGTTCATTATTTTGACTAAAAGTCTGTATCAAGCAGCAAGGACGGGAGAGGGGGATGAAATGATTGACAGGATGAGGTCTGCAGGACATGGTGATGCACTTGATAAGAAGACTTACTATGAGTTTCTTAACATTTTGTGTGGGATCGAGAGGATTGATCATGCCTTGACTGTCTTTGAAAAAATGAAGAAAGAGGGGTGTGAACCTGGGATTATGACATATGAGCTATTAATTGGAAATCTCTGTGCTCATAATCATCTGGACAAAGCAAATTCACTCTTTAATGAATCTCAAAAACGGGGAGTGCCAGTTACTCCAAAAGCATATCAGGTGGATCCAGGATATGTGAAGAAGCCAAAGGTAAAGAACCTCGAGAAGAAGAGGGAGACGTTGCCGGAAAAGATGGCGAGGAAGAGGAGGCGACTGAAGCAAATTCGACTTAGTTTCGTTAAGAAACCGAAAAAAGGCATGCGCAGAGCATTTTGA 1590 44.34 MPPLPYLQLRRILIRSLASSSSLSASSSSNFLNGSARSFLLHRNLTPLIHHFRHHGAAGMLSYPLQLSLSHSFSTESGENDVDQTSQSLATELLKDPDLDPLPITKRLQLSFSHVKPNPELVLNTLNLSSEAGRTVLGFNEWLVSNPDFHHTDETISYFVDYFGRRKDFNAIHEVLVKGLGISGAKTLRSSIDRFARTGRPTKLISFFETMEKNYGLKRDKESLRTVVEKLCENGYTSHAVKIVKDLANEFFPDEAICDSLIKGWCVNGKLDEAKRLAGEMYRGGFELGTTAYNDLLDCACKVCRKKDPFRLHSEAEEILVEMDYRGVPRNVETFNVLINNLCKIRKTTDALDLFHQMGEWGCHPNAETFIILTKSLYQAARTGEGDEMIDRMRSAGHGDALDKKTYYEFLNILCGIERIDHALTVFEKMKKEGCEPGIMTYELLIGNLCAHNHLDKANSLFNESQKRGVPVTPKAYQVDPGYVKKPKVKNLEKKRETLPEKMARKRRRLKQIRLSFVKKPKKGMRRAF 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1295532 1297121 - Carg17871-RA Car10g00272 155174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00272 529 Pfam PPR repeat 260 285 IPR002885 -
Car10g00272 529 Pfam PPR repeat family 331 377 IPR002885 -
Car10g00272 529 Pfam PPR repeat family 406 450 IPR002885 -
Car10g00272 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Car10g00272 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Car10g00272 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Car10g00272 529 Coils Coil 489 509 - -
Car10g00272 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00272 Car13g00748 CCT
Car10g00272 Car11g00196 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00272 Car-Chr10:1295532 Car04g02038 Car-Chr4:16555064 7.43E-06 dispersed
Car10g00272 Car-Chr10:1295532 Car11g00196 Car-Chr11:1133328 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00272 - - csv:101213658 880.937