Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00275 ATGGTATGCCAATGCAATTTCATCAGAGTCGTTTGTCTCAAGGAAGTGATTTGGGTTCTCAGTCTATTAAGAAATCCCAGCCATTGGAGTTGCATTCTCATTCTAAGCTCGGTGAGTCCCCAGTTCAAGAGCCTTATCGAGCTCCAATGCACATGGATGAAGTTAGATCAATTGCACCAGTTGCAAACAATCAACCTAGTCAAACCTTTTGGATTCCCAAGCTTTCAGAATGAAGAAAACTTTGGGCGGACTTCTGTGGAGACGAATTCTTCAAGTTTTTTTCCTCACCGAAACTTTAATGATCATTCTGTGCCCTTTACAAATGCAAATATAATGCAATCTTCTGGTGACAATTTTCCTCCTAGTGAATTTCGAAGTTCATTTTCACAGTTGCATCCTTATTCACGGTTTCAACAGCCATTGTACACCTCACAACCTGCACATGATAGTTTGTTCCGTGAACCAAGCCAGATTGGTAGTATGTTTCAAAATTATCCCGATCCTCTAAGCAGGAACCATTCATCTTTGCTTCCTGATTTAGGGGGTTTGGGAATTACCTCTTACCATAATCCTTATGCATCTACTTTTGGGAAGCCACTTAGCTCCAGCTTCAGATCCAACATTTTGAACTTTGGAAATGATGCACCTAGTGGTGATATACGTAGTTCTACTTTCAATGTGAGCAATGTTCACGTTGATGGGCAAGGTGCTAATTATGTTGGAACAAGGCAGACAACTGCTTCACCAAATTCCACCAAACCTTTGGGGAAAGTCTTGCTCAGTACAGGTGGTGATCAGTATGATCCACTCTTTGACAGCATTGAGCCATCATTACCTATATCCAAGAAATCTGACTGTGGTCAAAAGCTGGAAAAAGAAAGGGAATCTTATACAATGACAAGCCTTGGTAGTTCCCATAAATTACTATATGTGGAGGAGAACAACAAGCATACAGAAGTTGCCGCTGTGGCTTCAACTACTACTCTGGAGAATGATGAATTTGGAGAGACAGCAGATGCAGAGGCGGGTGCTGTTGAGGATGACCTTGATGACGAAGAAAATTTATCAGGAGAAATCGAAATTGATCAGGTTAAGTCCTCAGAGAAGAGCAAGAAGTCCAAAGGTTCCAGGTCACTGAAGCTTTTCAGGATTGCTATTGCCGATTTTGTTAAGGAAATTTTAAAACCATCATGGCGACAGGGCAATATGAGCAAGGAAGCCTTTAAGACAATTGTCAAGAAGACTGTTGACAAGGTATCTGGAGCTATGAAGAGTCACCAAATACCCAAGTCTCAAGCAAAGATAAATCGATACATTGATTCATCACAACGAAAACTGACAAAGCTTGTTATGGGACACCGCATAAACCCGGTAAATCTCAAGCTCGCAACCTACGATGAAAAAAGTGTGGAGGCGGGGCGGCTCGCGGGAATCCTGACGACCTTCGGCTTCTCAAGTTTACAAGGAATCAAAGGATGGGATTCTGGAATTACTAATACCATATACCTTCACAAGCTCAGTAGTCTTAAGCTTTGA 1536 41.86 MVCQCNFIRVVCLKEVIWVLSLLRNPSHWSCILILSSVSPQFKSLIELQCTWMKLDQLHQLQTINLVKPFGFPSFQNEENFGRTSVETNSSSFFPHRNFNDHSVPFTNANIMQSSGDNFPPSEFRSSFSQLHPYSRFQQPLYTSQPAHDSLFREPSQIGSMFQNYPDPLSRNHSSLLPDLGGLGITSYHNPYASTFGKPLSSSFRSNILNFGNDAPSGDIRSSTFNVSNVHVDGQGANYVGTRQTTASPNSTKPLGKVLLSTGGDQYDPLFDSIEPSLPISKKSDCGQKLEKERESYTMTSLGSSHKLLYVEENNKHTEVAAVASTTTLENDEFGETADAEAGAVEDDLDDEENLSGEIEIDQVKSSEKSKKSKGSRSLKLFRIAIADFVKEILKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINRYIDSSQRKLTKLVMGHRINPVNLKLATYDEKSVEAGRLAGILTTFGFSSLQGIKGWDSGITNTIYLHKLSSLKL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1312532 1318811 + Carg17868-RA Car10g00275 155177

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00275 - - - mcha:111007314 641.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00275 Car11g00194 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00275 Car-Chr10:1312532 Car11g00194 Car-Chr11:1118644 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00275 Car_Chr10 FPKM 2.261745 3.177728 1.779573 2.435065 3.835681 2.507259 1.616137 0.678009 1.844995 1.054854