Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00289 ATGGCTATGGCGCCTGATCGATCAAAGCCGCTGCACAACTTCTCCTTGCCGTATCTCAAATGGGGCTCCCAGAGATTCCTCAAGTGTATGAAGCTTTCTTCTAACTCCAACCCCGCTGCTCATCGCCAATCGGAATCCTACCGAGTCCGGGAGAGACCTATTAATTCTAAAGGCGCGAACTCCACCAGATTCTCTTCTCCGATGAAACCTAGTGAAGGGAACAACGATGGGAGCAGTTCCATTGAAATCATGCGCGAGAAGATCATGCTCGATATTAGGGAGGAATCGAAGAGACTCAAGTTTTCGATTGCTGATGAAGGCGGCGAGGGGGAATCCGCTGCGGCTCGGCCGTGGAATTTGCGGACTCGTAGAGCAGCGTGTAAGGCTCCTCCAGATGAGAGGACTCCAGAATTCGGTTCATCTTCGATCAAAGCTGTAACGAAGAAGGAGAAGGAGAAGGAGAAGAATCGCAGTACGCTATTTGTATCGCTGTCGAAAGAGGAGCTTGAAGAGGACTTCGCGGTGCTCGTCGGTAAGCTACCGAGGAGGCCAAAGAAGAGGCCTAGAACTGTACAAAAGCAATTGGATGCACTTTTTCCTGGGCTGTTACTGACTGAAATCACTGTAGATTCATATAAAGTTGCTGAAACTTGA 654 49.54 MAMAPDRSKPLHNFSLPYLKWGSQRFLKCMKLSSNSNPAAHRQSESYRVRERPINSKGANSTRFSSPMKPSEGNNDGSSSIEIMREKIMLDIREESKRLKFSIADEGGEGESAAARPWNLRTRRAACKAPPDERTPEFGSSSIKAVTKKEKEKEKNRSTLFVSLSKEELEEDFAVLVGKLPRRPKKRPRTVQKQLDALFPGLLLTEITVDSYKVAET 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1390003 1390770 - Carg15156-RA Car10g00289 155191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00289 217 MobiDBLite consensus disorder prediction 127 157 - -
Car10g00289 217 MobiDBLite consensus disorder prediction 33 81 - -
Car10g00289 217 MobiDBLite consensus disorder prediction 55 81 - -
Car10g00289 217 Pfam Protein of unknown function (DUF1639) 164 212 IPR012438 -
Car10g00289 217 PANTHER PUTATIVE (DUF1639)-RELATED 2 216 - -
Car10g00289 217 PANTHER OS01G0688600 PROTEIN 2 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00289 - - - csv:101214785 296.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00289 Car11g00257 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01553 Car-Chr4:9024687 Car10g00289 Car-Chr10:1390003 4.42E-38 dispersed
Car04g02008 Car-Chr4:15746066 Car10g00289 Car-Chr10:1390003 1.48E-42 dispersed
Car10g00289 Car-Chr10:1390003 Car15g00862 Car-Chr15:5054941 1.22E-30 dispersed
Car02g01320 Car-Chr2:8770839 Car10g00289 Car-Chr10:1390003 2.53E-28 transposed
Car15g01013 Car-Chr15:7910146 Car10g00289 Car-Chr10:1390003 1.37E-27 transposed
Car10g00289 Car-Chr10:1390003 Car11g00257 Car-Chr11:1422055 2.53E-71 wgd
Car10g00289 Car-Chr10:1390003 Car18g00930 Car-Chr18:10032022 1.22E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g300 . . . . . Bpe13g00357 . . . . Cma10g00304 Cma11g00283 Car10g00289 Car11g00257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00325 Cmo11g00286 . . . . . . . . . . . . . . . . . . . . Lsi06g01321 . . Cme02g01730
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011010 1 1 0 1 1 1 2 1 1 0 1 0 2 1 1 2 0 1 2 0 0 1 1 1 1 1 1 2 1 3 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00289 Car_Chr10 FPKM 14.404536 12.894488 20.956713 20.388519 39.532665 37.809036 39.250065 15.972226 16.527102 14.807908