Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00301 ATGTCTCGCCGCAGCCATGTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAGGACGATGAAGATGATCTGGTTGATGATGACATGGAAGCCCTACGAAGAGCGTGCAGACTTGCTGGAGTTAATCATGAGGATTATATCAATCCCCGGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGGAATATTCAGAACCGGTTCTCGATTGCGGCCGATGAGAAGCCGCTGAGTATTCTCCCACCGGTGACCGCGGACGAGGAGGAAGATGATTTCGAGACGCTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGACAACACAGATGTTGAAAGATTGACATCCTCAGAAAGGTCATCCATGATAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCACCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGTAGACGAAAAACAACTTGTGCCCTGACTCAGATGGTAGATCCTCGAGTTCAGTTAATATCAGCTGGAAAACCACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAACAGCATTGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAATCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGAAGCCTTACTGAAATTATGGTATTTGGCAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGACAACATTCTTGCATCAATAAAAGACCTCGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGTTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATTCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGAACTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACGTTGGAAGGGCGAACTGGTCCACAGTGCTCTAACAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCAAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGATGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAAGAGGAAATCAAATAACCAGAGGAATCGAGCTGATGAAACGGCTCAGGTGGATTTTGCAAATAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCATATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGTGCAGAACAGAATTCGGACACTCAGAGCCTTGAGGTGCAGTTGAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGAGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCCTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATTATAGAAACGAAGGGCGTGAATGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCATTACCTCAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGATAGCTATTCTGTGGATGAATTCACAGATAAAAGCCATGGGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGATGAATGAGCTTCATCGTTGTAATCAATCGAAGAAGAGAAAGCATAGCGGTACGAATACGAGTCCATTAGGAACAATGGAAGCAGTTGAAGAGGTTGATGACTGCACTCTCCAGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGACAAGAAAGTGGATGGCAGTTCAAGCACTCCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAAGGATAAATTGAAGAGAGAAAAAGCATTAAGCGCATAG 3042 43.33 MSRRSHVDGGDKELPASEEDDEDDLVDDDMEALRRACRLAGVNHEDYINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEKPLSILPPVTADEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTDVERLTSSERSSMIAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALTQMVDPRVQLISAGKPQAKDSSKKDKRLSAMCYGPAENSHVACYRTALTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQIRSLTEIMVFGSEIQGFSAESDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNSWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQRSLNASILKSEWTKDEDDKLRSAVAIFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRMRRMPVSRNEKSANGDAPKKRKSNNQRNRADETAQVDFANNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTQSLEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTPPDTTLLASITADDIIIETKGVNVADKDLDDSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHGVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGMNELHRCNQSKKRKHSGTNTSPLGTMEAVEEVDDCTLQGFLQKRLKRTTTTHDKKVDGSSSTPPEVDNDDNDPTLALLLKDKLKREKALSA 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1473315 1483401 - Carg15168-RA Car10g00301 155203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00301 1013 ProSiteProfiles Myb-like domain profile. 545 595 IPR001005 -
Car10g00301 1013 ProSiteProfiles Myb-like domain profile. 387 439 IPR001005 -
Car10g00301 1013 MobiDBLite consensus disorder prediction 623 730 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 928 948 - -
Car10g00301 1013 ProSiteProfiles Myb-like domain profile. 493 544 IPR001005 -
Car10g00301 1013 MobiDBLite consensus disorder prediction 885 912 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 970 996 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 1 28 - -
Car10g00301 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 545 599 IPR017930 -
Car10g00301 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 497 544 IPR017930 -
Car10g00301 1013 Pfam Myb-like DNA-binding domain 551 594 IPR001005 -
Car10g00301 1013 Pfam Myb-like DNA-binding domain 498 544 IPR001005 -
Car10g00301 1013 Pfam Myb-like DNA-binding domain 392 437 IPR001005 -
Car10g00301 1013 Pfam Myb-like DNA-binding domain 445 489 IPR001005 -
Car10g00301 1013 MobiDBLite consensus disorder prediction 649 684 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 685 705 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 14 28 - -
Car10g00301 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 440 495 IPR017930 -
Car10g00301 1013 ProSiteProfiles Myb-like domain profile. 440 491 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00301 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1478.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00301 Car11g00276 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00301 Car-Chr10:1473315 Car05g00545 Car-Chr5:3189819 5.93E-12 dispersed
Car10g00301 Car-Chr10:1473315 Car14g00119 Car-Chr14:591881 4.24E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00806 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Car10g00881 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.3 0.0e+00 1202.6
Car10g00301 CST 165 640 MYB-Related Transcription Factor Family AT3G18100 54.2 4.3e-146 515.8
Car10g00301 CST 165 640 MYB-Related Transcription Factor Family AT3G18100 54.2 4.3e-146 515.8
Car12g00806 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Car10g00881 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.3 0.0e+00 1202.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4161 PF00249 Myb_DNA-binding 9.80E-09 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00301 Car_Chr10 FPKM 53.177433 57.107632 2.623363 3.213645 36.634312 38.905411 36.509045 2.927246 1.742532 1.698604