Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00301 ATGTCTCGCCGCAGCCATGTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAGGACGATGAAGATGATCTGGTTGATGATGACATGGAAGCCCTACGAAGAGCGTGCAGACTTGCTGGAGTTAATCATGAGGATTATATCAATCCCCGGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGGAATATTCAGAACCGGTTCTCGATTGCGGCCGATGAGAAGCCGCTGAGTATTCTCCCACCGGTGACCGCGGACGAGGAGGAAGATGATTTCGAGACGCTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGACAACACAGATGTTGAAAGATTGACATCCTCAGAAAGGTCATCCATGATAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCACCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGTAGACGAAAAACAACTTGTGCCCTGACTCAGATGGTAGATCCTCGAGTTCAGTTAATATCAGCTGGAAAACCACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAACAGCATTGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAATCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGAAGCCTTACTGAAATTATGGTATTTGGCAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGACAACATTCTTGCATCAATAAAAGACCTCGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGTTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATTCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGAACTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACGTTGGAAGGGCGAACTGGTCCACAGTGCTCTAACAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCAAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGATGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAAGAGGAAATCAAATAACCAGAGGAATCGAGCTGATGAAACGGCTCAGGTGGATTTTGCAAATAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCATATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGTGCAGAACAGAATTCGGACACTCAGAGCCTTGAGGTGCAGTTGAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGAGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCCTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATTATAGAAACGAAGGGCGTGAATGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCATTACCTCAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGATAGCTATTCTGTGGATGAATTCACAGATAAAAGCCATGGGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGATGAATGAGCTTCATCGTTGTAATCAATCGAAGAAGAGAAAGCATAGCGGTACGAATACGAGTCCATTAGGAACAATGGAAGCAGTTGAAGAGGTTGATGACTGCACTCTCCAGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGACAAGAAAGTGGATGGCAGTTCAAGCACTCCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAAGGATAAATTGAAGAGAGAAAAAGCATTAAGCGCATAG 3042 43.33 MSRRSHVDGGDKELPASEEDDEDDLVDDDMEALRRACRLAGVNHEDYINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEKPLSILPPVTADEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTDVERLTSSERSSMIAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALTQMVDPRVQLISAGKPQAKDSSKKDKRLSAMCYGPAENSHVACYRTALTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQIRSLTEIMVFGSEIQGFSAESDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNSWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQRSLNASILKSEWTKDEDDKLRSAVAIFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRMRRMPVSRNEKSANGDAPKKRKSNNQRNRADETAQVDFANNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTQSLEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTPPDTTLLASITADDIIIETKGVNVADKDLDDSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHGVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGMNELHRCNQSKKRKHSGTNTSPLGTMEAVEEVDDCTLQGFLQKRLKRTTTTHDKKVDGSSSTPPEVDNDDNDPTLALLLKDKLKREKALSA 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1473315 1483401 - Carg15168-RA Car10g00301 155203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00301 1013 ProSiteProfiles Myb-like domain profile. 545 595 IPR001005 -
Car10g00301 1013 ProSiteProfiles Myb-like domain profile. 387 439 IPR001005 -
Car10g00301 1013 MobiDBLite consensus disorder prediction 623 730 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 928 948 - -
Car10g00301 1013 ProSiteProfiles Myb-like domain profile. 493 544 IPR001005 -
Car10g00301 1013 MobiDBLite consensus disorder prediction 885 912 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 970 996 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 1 28 - -
Car10g00301 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 545 599 IPR017930 -
Car10g00301 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 497 544 IPR017930 -
Car10g00301 1013 Pfam Myb-like DNA-binding domain 551 594 IPR001005 -
Car10g00301 1013 Pfam Myb-like DNA-binding domain 498 544 IPR001005 -
Car10g00301 1013 Pfam Myb-like DNA-binding domain 392 437 IPR001005 -
Car10g00301 1013 Pfam Myb-like DNA-binding domain 445 489 IPR001005 -
Car10g00301 1013 MobiDBLite consensus disorder prediction 649 684 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 685 705 - -
Car10g00301 1013 MobiDBLite consensus disorder prediction 14 28 - -
Car10g00301 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 440 495 IPR017930 -
Car10g00301 1013 ProSiteProfiles Myb-like domain profile. 440 491 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00301 Car11g00276 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00301 Car-Chr10:1473315 Car05g00545 Car-Chr5:3189819 5.93E-12 dispersed
Car10g00301 Car-Chr10:1473315 Car14g00119 Car-Chr14:591881 4.24E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4161 PF00249 Myb_DNA-binding 9.80E-09 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00301 K09422 - csv:101216287 1478.0