Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00303 ATGGCGACGGCGGAGCTCTGTGAGACTTACGCCTGCGTGCCATCTACCGAGCGAGGCAGAGGAATTTTGATCTCCGGGCACCCCAAAACCAACTCTATTCTCTACACCAATGGCCGATCCGTCATAATCCTCAATCTCGATAACCCGCTCGAGGTTTCTGTTTATGCTGAACACGCGTATCCGGCTACGGTTGCTAGGTACTCGCCGAATGGCGAGTGGATCGCGTCCGCTGATGTGTCCGGGACTGTGAGGATTTGGGGAACTCATAGTGGCTTTGTGCTTAAGAAGGAGTTTAAGGTTTTGACTGGGCGGATCGATGATTTGCAATGGTCTCCTGATGGAATGAGGATTGTGGTTTGTGGCGAGGGGAAGGGGAAATCGTTAGTGCGTGCTTTTATGTGGGATTCGGGCACGAACGTCGGCGAGTTTGATGGACATTCTAGGCGGGTTTTAAGCTGTGGATTTAAGCCAACAAGACCCTTTCGCATTGCCACCTGCGGAGAGGATTTCCTAGTGAATTTTTATGAAGGACCGCCATTTAGATTTAAGCTATCTCTCAGGAACCATTCAAATTTTGTCAACTGTGTAAGGTTCTCTCCAGATGGCAGCAAGTTCATTAGTGTAAGCTCTGACAAGAAGGGTATAATATATGATGCGAAGACCGGGGATAAGATGGGAGAACTCTCTCCCGATGATGGGCATAAAGGTAGTATTTATGCTGTCAGCTGGAGTTCGGATGGAAAACAGGTGCTGACTGTCTCTGCCGACAAGACAGCAAAAGTCTGGGTGATATCTGATGATGGTAATGGGAAGTTGGTGAAAACCTTGACTTCTCCTGGCACTGGTGGAATTGATGATATGCTAGTTGGGTGTTTATGGCAGAATCAACATCTTGTCACAGTTTCTCTTGGTGGAACTATTAGCTTGTTTTCAGCTAATGATCTTGAAAAAACCCCGGTCATCTTATCAGGACATATGAAGAATGTTACTTCATTAGTTGTTCTTAAAAGTGACCCTAAAGTTATATTATCTACTAGCTACGATGGGCTGATTATTAAATGGATCCAAGGAATTGGATTCAGTGGCAAGTTGCAAAGAAGAGAAAATTCTCAAATCAAATGTTTTGCAGCTCTTGAAGATGAACTTGTTACATCTGGTTTCGACAACAAGGTATGGAGAGTTTCTATCAAGAATGGTGAGTGTGTGGAAGCAGAAGCTATTGATGTTGGAAGTCAACCAAAGGACTTGACGCTTGCTGCTCTTTCTCCTGAACTTGCTTTGGTTTCAATTGATTCTGGAGTTGTCTTACTGCGTGGCTCAAAAGTAGTGTCAACCATCAACCTTGGCTTTACCGTGACAGCATCTGTACTTGCGCCTGATGGAAGTGAGGCTATTATAGGTGGGGAAGATGGTAAATTACATATTTATTCTGTTGTTGGCGACTCCCTCACTGAAGAAGCAACCCTTGAGAGACACAGAGGAGCTGTTAGTGTGATACGCTACTCCCCAGATCTTTCAATGTTTGCATCAGGAGATCTCAACCGAGAAGCTATTGTCTGGGATCGTGCATCCCGAGAGGTGAAACTTAAGAATATGTTGTATCACACTGCTCGGATAAATTGCCTCGCTTGGTCTCCTGATAACACCAAGGTTGCGACTGGTTCATTAGATACATGTGTCATCATATATGAGATTGACAAGCCAGCATCCAATCGTCTAACAATAAAGGGAGCTCATTTGGGTGGGGTGTACGGCCTGGCCTTCACAGATGACTATAGCGTGGTGAGCTCTGGTGAGGATGCTTGCGTTCGTGTTTGGAAGTTGGTTCCTCAGTGA 1836 45.53 MATAELCETYACVPSTERGRGILISGHPKTNSILYTNGRSVIILNLDNPLEVSVYAEHAYPATVARYSPNGEWIASADVSGTVRIWGTHSGFVLKKEFKVLTGRIDDLQWSPDGMRIVVCGEGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCGFKPTRPFRIATCGEDFLVNFYEGPPFRFKLSLRNHSNFVNCVRFSPDGSKFISVSSDKKGIIYDAKTGDKMGELSPDDGHKGSIYAVSWSSDGKQVLTVSADKTAKVWVISDDGNGKLVKTLTSPGTGGIDDMLVGCLWQNQHLVTVSLGGTISLFSANDLEKTPVILSGHMKNVTSLVVLKSDPKVILSTSYDGLIIKWIQGIGFSGKLQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKNGECVEAEAIDVGSQPKDLTLAALSPELALVSIDSGVVLLRGSKVVSTINLGFTVTASVLAPDGSEAIIGGEDGKLHIYSVVGDSLTEEATLERHRGAVSVIRYSPDLSMFASGDLNREAIVWDRASREVKLKNMLYHTARINCLAWSPDNTKVATGSLDTCVIIYEIDKPASNRLTIKGAHLGGVYGLAFTDDYSVVSSGEDACVRVWKLVPQ 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1492035 1497766 - Carg15170-RA Car10g00303 155205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 96 IPR001680 GO:0005515
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 262 - -
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 222 - -
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 573 IPR001680 GO:0005515
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 521 IPR001680 GO:0005515
Car10g00303 611 Pfam WD domain, G-beta repeat 65 86 IPR001680 GO:0005515
Car10g00303 611 Pfam WD domain, G-beta repeat 577 607 IPR001680 GO:0005515
Car10g00303 611 Pfam WD domain, G-beta repeat 185 213 IPR001680 GO:0005515
Car10g00303 611 Pfam WD domain, G-beta repeat 535 563 IPR001680 GO:0005515
Car10g00303 611 Pfam WD domain, G-beta repeat 232 262 IPR001680 GO:0005515
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 521 - -
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 262 IPR001680 GO:0005515
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 576 611 - -
Car10g00303 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 611 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00303 K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1) - csv:101218837 1169.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00303 Car11g00277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00303 Car-Chr10:1492035 Car08g00308 Car-Chr8:1972092 2.13E-07 dispersed
Car10g00303 Car-Chr10:1492035 Car11g00277 Car-Chr11:1517513 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g232 . Blo16g00117 . . . Bpe13g00373 Bma06g00062 . . . Cma10g00323 Cma11g00303 Car10g00303 Car11g00277 Sed08g0392 . Cpe04g01380 Bhi02g00125 Tan09g1839 Cmetu02g0822 . Hepe09g0377 . . Cla06g01431 Cam06g1585 Cec06g1645 Cco06g1637 Clacu06g1546 Cmu06g1501 Cre06g2310 Cone2ag0753 . . . . . . . . . Bda11g01783 . . . . . . Cmo10g00346 Cmo11g00306 . . . . . . . . . . . . . . . . . . . . Lsi06g01298 Csa01g00422 Chy02g02322 Cme02g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006924 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00303 Car_Chr10 FPKM 7.234879 6.815027 6.076265 5.783716 12.380871 10.534851 13.172491 4.028097 3.756518 4.076712