Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00306 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTGATCCTACTTCTGATTCTAATCTCAGTTATCCTTATCATGATAAGCTCGATCATGTTGTTAATGGTGACCAATTGGTGAGTAGCGATTTGCGCGCCCAATCGACTATTGCTCCCAAACGGAAACAAATCCAACTTGGAGGAGAAGGGATTCTTGAGCGATTACCTGAGGAGGAGCACGACTACGACGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCACTTCAGAGCTCCGCTTCCTCCTCCTCCTCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGGCAGCAGATATCAGGTTCAAGAAATAATCGGTAAAGGAAGCTATGGGGTGGTCGGTTCGGCCATTGATACGCATACTGATGAGAAGGTCGCAATTAAGAAAATTAATGACGTTTTCGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTGCGGTTGCTCCGTCATCCTGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGATCTTCACCAAGTAATTAAGGCCAACGATGATCTCTCTCCTGAGCACCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGGTTGGTGGTCTCCAACAAATGTGTTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTTTCGTTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGTTCTTTTTTCTCGAAATACACTCCTGCAATTGATATGTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGGAAGCCACTGTTCCCTGGGAAAAATGTGGTGCACCAACTGGATCTGATGGTTGATGTGCTTGGCACGCCTTCTGCCGAGTCCATTGCCAAGATTCGAAATGAAAAGGCAAGAAGATACATTAGTAATATGAGGAGAAAGCAGCCTGTTTCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTTCGCTTGCTTAAACGTCTCCTTGCATTTGATCCCAAAGACCGTCCCACAGCTGAAGAGGCATTAGCTGATCCTTATTTTCATGGTTTGGCCAATGTGGATCGCGAACCATCAACACAACCAATTTCAAAACTCGAGTTTGAATTTGAGAGAAGAAAGTTGACAAAAGAGGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTACAGGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGCGGTGTCGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACATTATGGAAAGGGCGAAAGAAGTACTCCACTTCAAAGAAAGCATGCTTCATTGCCCAGAGAAAGGGTTTGTGCACCAAAAGACGAGGTCGAACAACACAATGATTTAGAAGGAAGAAATGGTGCACATGTTGCTACATCTCTTCAGAGTCCCCCAAGGTCGACAGCGGATAGTTCGGAAAATGCAAACGGTTACGAACAAAATGGACCAAACAAGGCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGTTGTTAAACCAAGAAACGACCTAGAGGAGGAACCGATTACGGAGACGAACGACGAGGCAGTTGATGGATTGTCTCAAAAGGTTTCAGCATTGCATGCTTGA 1941 43.89 MGSGTLVDGVRRWFQRRTSSSSSSSSSSDPTSDSNLSYPYHDKLDHVVNGDQLVSSDLRAQSTIAPKRKQIQLGGEGILERLPEEEHDYDDDLDYSALKLIKVPKRTNHFRAPLPPPPPPPPALMDSHKKGGLETEFFTEYGEGSRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLSPEHHQFFLYQLLRGLKYIHTGWWSPTNVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDMWSIGCIFAEMLTGKPLFPGKNVVHQLDLMVDVLGTPSAESIAKIRNEKARRYISNMRRKQPVSLTQKFPNADPLALRLLKRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKEDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRKHASLPRERVCAPKDEVEQHNDLEGRNGAHVATSLQSPPRSTADSSENANGYEQNGPNKANYSARSLLKSASISASKCIVVKPRNDLEEEPITETNDEAVDGLSQKVSALHA 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1502928 1507882 - Carg15173-RA Car10g00306 155208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00306 646 ProSitePatterns MAP kinase signature. 182 290 IPR003527 GO:0004707|GO:0005524|GO:0006468
Car10g00306 646 Pfam Protein kinase domain 147 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00306 646 MobiDBLite consensus disorder prediction 615 646 - -
Car10g00306 646 ProSitePatterns Protein kinases ATP-binding region signature. 153 177 IPR017441 GO:0005524
Car10g00306 646 MobiDBLite consensus disorder prediction 522 559 - -
Car10g00306 646 MobiDBLite consensus disorder prediction 110 129 - -
Car10g00306 646 MobiDBLite consensus disorder prediction 14 38 - -
Car10g00306 646 MobiDBLite consensus disorder prediction 522 594 - -
Car10g00306 646 ProSiteProfiles Protein kinase domain profile. 147 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00306 646 MobiDBLite consensus disorder prediction 1 43 - -
Car10g00306 646 MobiDBLite consensus disorder prediction 110 125 - -
Car10g00306 646 MobiDBLite consensus disorder prediction 564 594 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00306 Car13g00832 CCT
Car10g00306 Car13g00832 ECH
Car10g00306 Car11g00281 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00306 Car-Chr10:1502928 Car17g00253 Car-Chr17:1566217 0 dispersed
Car10g00306 Car-Chr10:1502928 Car11g00281 Car-Chr11:1535991 0 wgd
Car10g00306 Car-Chr10:1502928 Car13g00832 Car-Chr13:9009266 2.97E-178 wgd
Car10g00306 Car-Chr10:1502928 Car18g00057 Car-Chr18:284844 1.55E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89121 PF00069 Pkinase 9.30E-66 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00306 - - cpep:111793155 1080.47