Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00316 ATGGCGTTCGTTGGGTTTATTGGTTTGGATGATCTGAGCTTCGAATTGGCTACTTCACTAATCCGTGGCGGTTACAGAGTCAAAGCTTATGAGATAAATCAGGCCTTGACAGATAAATTTTTGAAGTTAGGGGGAATAAGCTGTGCCAGTACTATAGAGGCAGGGGAAGATGTTGTAGCATTGCTTGTATTGAACAGTCATTTCAATCTGATAAATGATTTATCTTTTTCTGATGCTATCCCAGGGTTGCATAAGGATGTCGTTGTTGTTCTTGTCCGTTCAACTCTACTGGAGAAGGATGTCCACAACTCGAAAAAGCTTTCTACAGGCAATTCCACCCTAACTTTCTCAAAATGTTGCATTTACAAGTCATTTGATCTATACCTTTGTGACGGTCACTTCCCCTTTTCTGCAGTTAATTTTGAGATACCTAATCTTGTTGAAGCATATGTCTTTAAGGGTGTTTCTGAAGCTCTGGACGGTCAACTCATGATGATAACTTCGGGTAGGGCAGCTGCAATTTCTAGAGCTCGACCCTTTCTATCAGCTATGTGTGGAAAGCTTTTCATTTTTGAAGGTGAAGTTGATGCTGGAAGTAAAACAAATATGGTAATTGAGCTCCTTAAAGGAATTCATTTTGTGGCTTCACTGGAAGCTATTTCCCTGGGTATTAAAGCTGGAATTCACCCCTGGATAATCTACGACATTATTTCAAATGCTGCTGGGAATTCATGGGTTTTCAAGAATCATGTTCCCCACTTGTTAAAGGGCAATATTAGACCTGAGTTTTTGAGAAATTTGGTTCAAAATTTGGGGATTGTCATGGATAAGGCCAAGTCGCATACTTTTCCCCTTCCGCTCCTGGCAAGTGCTCATCAGCAACTTATGCTTGCTTCTTCTCACGGTGATAGAGATGATGACGGTTTGTTAGAACAGGTATGGAAAGGTGCATATGGAGTAAATATTTCTGACGCGGCAAATACGGAAATATACAGCCCTGAGCAACTAGCAAATGAAATAATTTCGAAATCAAGCTCTGTTATTCGAGTGGGTTTCATTGGTCTTGGTGCAATGGGATTTGGCATGGCAACTCACCTTATCAGATCAAATTTTTGTGTGATTGGTTATGATGTGTTTCAACCAACCTTGACTAAATTCTCTGATGCTGGTGGTTTGATTGGAATCTCGCCTGCAGAAGCTAGTAAAGATGTTGAAGTGCTTGTTATTATGGTGACAAATGAAGCACAAGTGGAGAGCGTTCTGTATGGAGAAGCTGGGGCTATCTCTGCACTTCCATATGGAGCGTCGATTATTCTGTCATCTACAGTTTCTCCTGGATATGTGAGCCAACTAGAACAACGCTTGGGAAATGAGGGCAAGAATTTTAAATTGGTTGATGCTCCTGTTTCTGGTGGTGTTCAAAGGGCCTCACAGGGAACCCTTACGATAATGGCTTCTGGGACAAATGAAGCTCTTAGGAGCGCTGGTTCAGTCCTCTCAGCCTTGAGTGAGAAGCTTTACGTTATTAAAGGAATTTGCGGGGCGGGAAGCGGCGTGAAAATGGTAAATCAATTGCTTGCTGGAGTTCATATAGCATCGGGTGCAGAGGCAATGGCATTTGGAGCTCGACTTGGTCTCAATACTAGAATTTTATTTGACGTCATCCTAAATAGTCAGGGAACATCCTGGATGTTTGAAAACCGAGTTCCACATATGCTGGATGATGATTATACACCATACTCCGCACTTGACATCTTTGTGAAGGACCTGGGCATTGTTTCTCGGGAATGTGCATCTCATAAAGTTCCTCTACACTTATCCGTGGCGGCACATCAATTATTTCTGGCAGGTTCTGCTGCGGGCTGGGGTCGTCAAGATGATGCTGGAGTAGTGAAGGTTTATGAGACGCTTACAGGTGTCAAGGTTAAAGGAAAACCTCCCACTCTTAAGAAAGAAGCTTTGTTGGGGTCTCTTCCTCCTGAATGGCCGCAAGATGTAATTGCTGATATTGAACAACTAAATGAAAGAAATTCAAAAATTTTGGTTGTGCTGGATGATGATCCAACGGGAACTCAAACTGTTCATGATATTGATGTTTTAACTGAATGGACCCTTGATTCACTTATTGAACAGTTTCGTAAAAAACCCAAATGCTTTTTTATCTTGACCAACTCAAGGTCACTGAGTTCTGAAAAGGCTGGGGCATTAGTTGAACAAATCTGCATTAATTTACGTGCTGCATCCGAGTGTGTCAAGCATAGCGACTACACGGTAGTTTTGAGAGGTGACTCAACCTTACGAGGTCATTTTCCCGAGGAAGCCGATGCTGCTATTTCAGTCTTAGGTGTAGTGGACGCATGGATCATCTGCCCATTCTTTTTCCAAGGAGGCCGTTACACTGTTGACGATATACACTATGTTGCAGATTCTGATGTGCTTATCCCTGCGGGGGACACTGAGTTTGCAAAAGATGCTACTTTTGGTTATAAATCTTCAAATCTTCGTGAGTGGGTTGAAGAGAAAACAGCTGGACGCATACAAGCTGACACTGTTACCTCTATTTCTATTCAACTTTTAAGGAAGGGTGGCCCAGATGCTGTTTGCAAGCACCTATGCAGCTTAGAGAAGGGAATGACATGCGTAGTTAATGCCGCTAGTGAAAGGGATATGGCCGTTTTTGCTGCTGGAATGATCAAGGCAGAAATAAAGGGCAAGAGTTTCTTGTGTCGAACTGCTGCCAGTTTCGTATCAGCCAGGATTGGGATCACTCCAATAGCTCCTCTTTTGCCAAAGGATGTTGGAATTGAGAAAGAGAGAAAGGGTGGTCTTATAATTGTGGGTTCATATGTTCCAAAAACTACAAAACAGGTTCAAGAGCTGAAGTTGCGATGTAGCCCATTTTTAAGATGTATTGAGGTTTCTGCTGCCAAACTTTCCATGAGTTCAGAGGAAGAGAGGGAGGAGGAAATCAGAAAAGCAGCTATATTTGCAGATATTTATCTCAGGGCTCACAAAGATACTCTAATTATGACTAGTCGAGAACTTATCACGGGAAAAAGTCCCTTGGAGAGTTTAGAAATCAATGTCAAAGTAAGTGCAGCACTAGTGGAAATAGTTCAGCGGATAAACACAAAACCTCGCTACATCCTTGCAAAGGGTGGAATTACCTCATCAGATATTGCTACCAAGGCTCTTGGAGCAAAATGTGCTAAGATAATTGGACAAGCCCTTTCTGGAGTTCCCTTGTGGCAACTAGGCAGTGAAAGTAGACATCCTGGAGTTCCATACATTGTTTTTCCAGGTAATGTTGGCAACAGTGAAGCACTAGCAGAAGTAGTCAGTTCTTGGGCCCTTCCTGCCAGACTTTCCTCTTCAAAAGAGATTCTTCTTAATGCAGAACGAGGTGGTTATGCAGTGGGAGCGTTCAATGTCTATAATTTGGAAGGAGTTCAGGCTGTTGTTGCTGCTGCTGAAGAACAACAGAGTCCTGCCATATTACAGATCCATCCAGGTGCCTTAAAGCAAGGAGGGCTCTCTTTGGTTTCGTGCTGTATTGCTGCTGCTGAACGAGCCAGTGTACCAATCTCTGTTCACTTTGATCACGGAAATTCGATGGAAGATCTGTTAGAAGCAATTGAATTGGGATTTGATTCAGTAATGGCAGATGGTTCACATCTTCCATTTAAGGAAAATATTGCCTACACAAAGTTCATTTCTTCCTTGGCTCAATCAAAAGACATGCTAGTGGAAGCTGAACTTGGTAGATTATCAGGAACAGAAGATGACTTGACTGTCGAAGATTACGAGGCAAGGCTGACCGATGTATCCCAGGCTCAACAATTTATTGAGGAGACTGGTATAGATGCTCTAGCAGTGTGTATCGGTAATGTCCATGGAAAATATCCAGCAAGTGGCCCGAATCTCAGACTCGATCTGCTCAAGGATTTGCATGCTCTGAGCGCAAGAAAAGGGGTCTTCCTGGTGCTGCACGGAGCTTCCGGTTTGCCTGAGAACCTCATAAAGGCTTGCATCGAGAACGGTGTGAGAAAGTTCAACGTAAACACCGAGGTTCGGAAGGCATACTTGGATTCACTGAATAGCCCCAGCAAAGACTTAGTCCATGTGATGGAATCAGCCAAAGAATCCATGAAATCTGTGATTGCAGAGAAGATTCATCTATTTGGTTCAGCAGGAAAAGCATTATGA 4206 42.91 MAFVGFIGLDDLSFELATSLIRGGYRVKAYEINQALTDKFLKLGGISCASTIEAGEDVVALLVLNSHFNLINDLSFSDAIPGLHKDVVVVLVRSTLLEKDVHNSKKLSTGNSTLTFSKCCIYKSFDLYLCDGHFPFSAVNFEIPNLVEAYVFKGVSEALDGQLMMITSGRAAAISRARPFLSAMCGKLFIFEGEVDAGSKTNMVIELLKGIHFVASLEAISLGIKAGIHPWIIYDIISNAAGNSWVFKNHVPHLLKGNIRPEFLRNLVQNLGIVMDKAKSHTFPLPLLASAHQQLMLASSHGDRDDDGLLEQVWKGAYGVNISDAANTEIYSPEQLANEIISKSSSVIRVGFIGLGAMGFGMATHLIRSNFCVIGYDVFQPTLTKFSDAGGLIGISPAEASKDVEVLVIMVTNEAQVESVLYGEAGAISALPYGASIILSSTVSPGYVSQLEQRLGNEGKNFKLVDAPVSGGVQRASQGTLTIMASGTNEALRSAGSVLSALSEKLYVIKGICGAGSGVKMVNQLLAGVHIASGAEAMAFGARLGLNTRILFDVILNSQGTSWMFENRVPHMLDDDYTPYSALDIFVKDLGIVSRECASHKVPLHLSVAAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVKGKPPTLKKEALLGSLPPEWPQDVIADIEQLNERNSKILVVLDDDPTGTQTVHDIDVLTEWTLDSLIEQFRKKPKCFFILTNSRSLSSEKAGALVEQICINLRAASECVKHSDYTVVLRGDSTLRGHFPEEADAAISVLGVVDAWIICPFFFQGGRYTVDDIHYVADSDVLIPAGDTEFAKDATFGYKSSNLREWVEEKTAGRIQADTVTSISIQLLRKGGPDAVCKHLCSLEKGMTCVVNAASERDMAVFAAGMIKAEIKGKSFLCRTAASFVSARIGITPIAPLLPKDVGIEKERKGGLIIVGSYVPKTTKQVQELKLRCSPFLRCIEVSAAKLSMSSEEEREEEIRKAAIFADIYLRAHKDTLIMTSRELITGKSPLESLEINVKVSAALVEIVQRINTKPRYILAKGGITSSDIATKALGAKCAKIIGQALSGVPLWQLGSESRHPGVPYIVFPGNVGNSEALAEVVSSWALPARLSSSKEILLNAERGGYAVGAFNVYNLEGVQAVVAAAEEQQSPAILQIHPGALKQGGLSLVSCCIAAAERASVPISVHFDHGNSMEDLLEAIELGFDSVMADGSHLPFKENIAYTKFISSLAQSKDMLVEAELGRLSGTEDDLTVEDYEARLTDVSQAQQFIEETGIDALAVCIGNVHGKYPASGPNLRLDLLKDLHALSARKGVFLVLHGASGLPENLIKACIENGVRKFNVNTEVRKAYLDSLNSPSKDLVHVMESAKESMKSVIAEKIHLFGSAGKAL 1401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1545032 1562554 - Carg15183-RA Car10g00316 155218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00316 1401 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 514 634 IPR029154 GO:0051287
Car10g00316 1401 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 197 307 IPR029154 GO:0051287
Car10g00316 1401 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 349 507 IPR006115 GO:0050661
Car10g00316 1401 Pfam Nucleotide-binding C-terminal domain 943 1109 IPR031475 -
Car10g00316 1401 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 352 365 IPR002204 GO:0016491
Car10g00316 1401 Pfam Sugar-binding N-terminal domain 681 918 IPR010737 -
Car10g00316 1401 Pfam Fructose-bisphosphate aldolase class-II 1125 1399 IPR000771 GO:0005975|GO:0008270|GO:0016832
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00316 - - - bhj:120070914 2402.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01282 Car-Chr5:11870913 Car10g00316 Car-Chr10:1545032 2.75E-24 dispersed
Car10g00316 Car-Chr10:1545032 Car14g01111 Car-Chr14:9833608 2.70E-13 dispersed
Car10g00316 Car-Chr10:1545032 Car01g00045 Car-Chr1:237919 1.86E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00316 Car_Chr10 FPKM 3.572161 4.235343 43.120415 40.413731 12.005808 12.170364 11.536257 29.161856 29.163794 33.657715