Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00326 ATGGCCTGCCCATCTCTGCCGCCGGCCACCATCACCTCCGTCATTCTCATTGTGATCTCATTGGAGCTGATTGTGTGTTGGGGCGCTCACACGGATGCAGAAGCGCTCCTCAAGTTCAAAAGCTCTCTTGAAATAAGCAATGATGCGTTGCGTGATTGGGGCCCGGAGTCCTCCCCTTGCTCCGAGAACAAGGCGAATTGGGTGGGTATTATTTGCCACAAGGGCCATGTTTGGGGATTGAAGCTCGAGCACATGGGGCTGAAGGGCAGCATTGACATGGAGTCCCTGGAAGGGATCCCCTTTTTAAGGATTATTAGCCTTAAGAACAATAATTTTGAGGGCTCTTTGCCGGATGTCAAGAGAGTTGGGGCATTGAAATCTCTGTTTTTGTCTGGAAACCAATTCTCAGGCAGCATTCCTGGGGATTCGTTTTCCAACATGATGTCTTTGAAGAAGGTTCATTTGGCACACAACCAGTTTGAGGGTCCGATTCCTTGGTCCTTGGTCGAGTTGCCTCGCTTATTGGAGTTGAGGCTGGAAGGAAACAAGTTTTCTGCCCGAATTCCTAATTTCCAGCAGAAGGCATTCAAGTCCTTTAATATCTCCCATAACGATCAACTTCATGGCCCAATCCCACAAGCCCTCTCCCGCATGGATCCATCCTCCTTTTCAGGCATTGAAGGCTTATGTGGACCGCCACTTAATAAACCATGCAATACCGCAGATATGCCATCAATCGCGAGCATCATCATGGTTTCAATAGCTCTGACACAAGCTTTGCTTGCCATCGGTGCAGGAATAGTAATCCTTAGCCGTCGGAACCAATCATCTTCTTGTGAAGAGGTTCCAGCCAACGGCAAATCTCCAGGTGCTAGAGCGTTAGATCCAGGAGTCGGGGCAAAGTCACCGGACCGTGCCTCCAGTCATGGATCGGGGAGACGGGTGGCTGAGGGTGCTAAGTTATCATTTGTAAGAGAGGACTTGGAGAAATTTGATTTATCAGACTTGCTTAAAGCCTCTGCACAGATCCTAGGAAGTGGGTGCTTCGGTTCTTCTTACAAGGCAGCCATGACCGGCGGACCTGTGGTGGTTGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAAAGATGAATTCCAAGAACATATGAAGAGAATTGGAAGATTGAAACACCCCAACTTGCTTCCTCTCGTAGCCTACTTCTACAAAAAGGAAGAAAAGCTTCTCATAACAAACTTTGTTGAGAAGGGTAGCTTGGTTATTCAACTTCATGGGCAAAAAGCCGAGGGTCAACCAGCCCTTGATTGGTCTGCAAGGTTGAAGATCATCAAGGGCATTGCAAAGGGTCTTCGCTATCTCTACAGTGAGCTTCCAAGTCTCATAACCCCACACGGCCATCTCAAGTCCTCAAATGTGCTTCTCAATGCCAACTATGAGCCCCTTCTTTCGGACTATGGCCTGATCCCAGTTATCAACCAAGAGCACGCCCAAGATCTAATGGTGGCCTACAGATCCCCGGAGTACAACCAACAAGGTCGCATCACAAAGAAAACAGATGTGTGGAGCTTTGGGCTGTTGATCCTAGAGATTCTAACAGGGAAACTCGTAGCCAACTTTCTGCATCAGGGCAAGGGTGGGGACGAGGAAGATTTGGCAAGTTGGGTCAAATCCATTCCTGCGACAGAATGGAATAGCCAAGTATTTGATAAGAACATGGGGCCAACCAAGAGCAGCGAGGGTGAGATGATGAAGCTTCTGAGGATTGCATTAGCATGTTGCGAGAGCGACTTTGAAAAGAGGCTGGATTTGAGAGAGGTTGTGGAGAAGATTGAGGAGTTGAAAGAAAAAGATGGGGATGAAGATTTTTATTCTTCATACGCCAGTGAATCTGATGTTAGATCTTCAAGAGGGTTATCTGATGAACTCAATTTTACCATGTGA 1941 47.45 MACPSLPPATITSVILIVISLELIVCWGAHTDAEALLKFKSSLEISNDALRDWGPESSPCSENKANWVGIICHKGHVWGLKLEHMGLKGSIDMESLEGIPFLRIISLKNNNFEGSLPDVKRVGALKSLFLSGNQFSGSIPGDSFSNMMSLKKVHLAHNQFEGPIPWSLVELPRLLELRLEGNKFSARIPNFQQKAFKSFNISHNDQLHGPIPQALSRMDPSSFSGIEGLCGPPLNKPCNTADMPSIASIIMVSIALTQALLAIGAGIVILSRRNQSSSCEEVPANGKSPGARALDPGVGAKSPDRASSHGSGRRVAEGAKLSFVREDLEKFDLSDLLKASAQILGSGCFGSSYKAAMTGGPVVVVKRFKQMNNVDKDEFQEHMKRIGRLKHPNLLPLVAYFYKKEEKLLITNFVEKGSLVIQLHGQKAEGQPALDWSARLKIIKGIAKGLRYLYSELPSLITPHGHLKSSNVLLNANYEPLLSDYGLIPVINQEHAQDLMVAYRSPEYNQQGRITKKTDVWSFGLLILEILTGKLVANFLHQGKGGDEEDLASWVKSIPATEWNSQVFDKNMGPTKSSEGEMMKLLRIALACCESDFEKRLDLREVVEKIEELKEKDGDEDFYSSYASESDVRSSRGLSDELNFTM 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1623298 1626166 - Carg15193-RA Car10g00326 155228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00326 646 Gene3D Phosphorylase Kinase; domain 1 305 413 - -
Car10g00326 646 Gene3D Ribonuclease Inhibitor 27 121 IPR032675 -
Car10g00326 646 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Car10g00326 646 MobiDBLite consensus disorder prediction 279 313 - -
Car10g00326 646 SUPERFAMILY Protein kinase-like (PK-like) 342 612 IPR011009 -
Car10g00326 646 Gene3D Ribonuclease Inhibitor 125 239 IPR032675 -
Car10g00326 646 ProSiteProfiles Protein kinase domain profile. 338 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00326 646 SUPERFAMILY L domain-like 29 218 - -
Car10g00326 646 MobiDBLite consensus disorder prediction 627 646 - -
Car10g00326 646 MobiDBLite consensus disorder prediction 626 646 - -
Car10g00326 646 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Car10g00326 646 Pfam Protein tyrosine and serine/threonine kinase 342 610 IPR001245 GO:0004672|GO:0006468
Car10g00326 646 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 624 - -
Car10g00326 646 Gene3D Transferase(Phosphotransferase) domain 1 414 632 - -
Car10g00326 646 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 10 624 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00558 Car-Chr5:3279337 Car10g00326 Car-Chr10:1623298 4.87E-146 dispersed
Car05g01346 Car-Chr5:12132090 Car10g00326 Car-Chr10:1623298 1.27E-139 dispersed
Car10g00326 Car-Chr10:1623298 Car12g00260 Car-Chr12:1743914 0 dispersed
Car10g00326 Car-Chr10:1623298 Car11g00304 Car-Chr11:1662825 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89123 PF07714 PK_Tyr_Ser-Thr 8.50E-31 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00326 - - csv:101213261 999.193