Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00353 ATGGATAGTTTCGGAAACGATTGCATGAATTACTTCGGGAGTGATATCTTCATACCAACGGAAGAGCTCGACAGTTGGGGATTCGACGAGCCGGTTTCCGGATACTACGATTCGAGTTCGCCGGAGGGAGTTCTGTCGTCGTCTTCGGCTACGAAGAACATAGCATCGGAGAGGAATAGGAGAAGGAAGCTTAACGAGAGGCTTTTTGCGCTCCGATCGGTCGTTCCTAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCCAAGATTTACATGAGCAAGAGAGGAGGGTTCAAACTGAAATTTCCGAGCTCGAATCAGGAAAGTTTAAGATAACAGGGTGTGAATTTGACCAGGAGCTTCCCTTGTTGCTCAGACCTAAGAGGAAGAAAACTGAGAAGTACTTCAGTTATGGATCTCCTGCTTCAAGAACTTCCCCCATTGAAGTCCAGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGCGGTGAGCATGACATGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTCTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTTCTGCTGTCTCTGGAAGGCTTTTGAAGACTGTCTTCATTGAGGCTGAGAAAGAGGAGAGGGATTACTTGAAAATTAAAATAGAAACAGCAATTGCAGGTCTTAATGATCCACATAGCCCCATGAGTATCTGA 735 43.67 MDSFGNDCMNYFGSDIFIPTEELDSWGFDEPVSGYYDSSSPEGVLSSSSATKNIASERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQDLHEQERRVQTEISELESGKFKITGCEFDQELPLLLRPKRKKTEKYFSYGSPASRTSPIEVQDLSVTYMGDRTIAVSMTCCKRADSMVKLCEVFESLKLKIITANISAVSGRLLKTVFIEAEKEERDYLKIKIETAIAGLNDPHSPMSI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1741309 1745787 + Carg15220-RA Car10g00353 155255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00353 244 Gene3D - 46 114 IPR036638 GO:0046983
Car10g00353 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 113 IPR036638 GO:0046983
Car10g00353 244 PANTHER TRANSCRIPTION FACTOR BHLH35 8 238 - -
Car10g00353 244 Coils Coil 94 114 - -
Car10g00353 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Car10g00353 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 238 - -
Car10g00353 244 SMART finulus 54 103 IPR011598 GO:0046983
Car10g00353 244 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00671 Car10g00353 CCT
Car10g00353 Car12g00870 CCT
Car10g00353 Car11g00332 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00353 Car-Chr10:1741309 Car16g00629 Car-Chr16:4013608 7.01E-23 dispersed
Car10g00353 Car-Chr10:1741309 Car11g00332 Car-Chr11:1815961 9.44E-115 wgd
Car10g00353 Car-Chr10:1741309 Car12g00870 Car-Chr12:8484802 3.32E-38 wgd
Car10g00353 Car-Chr10:1741309 Car05g00671 Car-Chr5:4206214 1.29E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4164 PF00010 HLH 2.80E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00353 - - cmo:103494233 363.999