Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00391 AAACCAAATCCAAAGCGCACCAAATATCTCTCCCAGCTCCTCACCCAACACACCCAGCACCCTGTTTCTTGGCGGGAGACTCTGGAGGCTTCTGAATTCACAACGCCATCAACCATGGGAATTCAGGGAGACGGTGTTGTGAAGGGTTTCGGCGGCGGATGGGGCGTGGTCGCTAAACCCTGCGACTCCTGCAAGACAGGGCCTGCAGCCGTATATTGTCGACCTGACTCTGCTTTCCTCTGCCTTTCCTGTGACGCAAAAATTCACTGCGCTAATAAGTTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAGGCTCCTGCTGTGGTCATGTGCAAGGCCGATGCTGCAGCTCTGTGTGTTACCTGCGATGCCGATATTCATTCCGCTAACCCATTGGCACGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCCGAGTCAATGATCAAATCCTCTTCGGGTTTCAATTTTCTCCTGCCCACTGAAACCAACGCCAGTGGCTGCCACGGTGCCAATCAACACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCACCTTTCAACTCTAAGCTCGTGGACGAGCCTGAAATCAAGCCACCTGGTCATGATCATATGTTCTTCACTGAAATGGATTCCTTTATTGATTTTGACTACCCAAACCCAGTCAACAACCACAGCGCGATTAACGACAGCGTCGTCCCTGTTCAAACCAAGCCACTCTGTACTCCGGTGATCAATACCCACTCCCCAGAAAATTGCTACGACATCGATTTTTGCAGATCCAAGCTCAATTCATTCGGCCATCAACCACTATCCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGAAGTCGGAGTTGTCCCAGAAGCGAATTCGATGTCCGACATATCATACCCATTGGGTCAAAGCGTGAGTAGTGGGGGGGACTCGGGGCTACCGGTATCGGGATCCGGCAACCCAGCGACTCAATTATGTGGAATCGACCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTACGCTTCAAGAAAAGCTTACGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGACACGCTATCAGAGGTTGAAGAAATGTACGGGTCGGCTGGTTCGTCTCTGTTCTTAGCAGACACCCAGTACGGCGTGGTACCGACGTTTTAA 1239 52.62 KPNPKRTKYLSQLLTQHTQHPVSWRETLEASEFTTPSTMGIQGDGVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESMIKSSSGFNFLLPTETNASGCHGANQHEEVEVASWLLSNPPFNSKLVDEPEIKPPGHDHMFFTEMDSFIDFDYPNPVNNHSAINDSVVPVQTKPLCTPVINTHSPENCYDIDFCRSKLNSFGHQPLSLSHSVSSSSLEVGVVPEANSMSDISYPLGQSVSSGGDSGLPVSGSGNPATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTLSEVEEMYGSAGSSLFLADTQYGVVPTF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1943234 1944565 + Carg15258-RA Car10g00391 155293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00391 412 ProSiteProfiles CCT domain profile. 339 381 IPR010402 GO:0005515
Car10g00391 412 Pfam CCT motif 339 381 IPR010402 GO:0005515
Car10g00391 412 ProSiteProfiles Zinc finger B-box type profile. 61 103 IPR000315 GO:0008270
Car10g00391 412 Pfam B-box zinc finger 101 146 IPR000315 GO:0008270
Car10g00391 412 ProSiteProfiles Zinc finger B-box type profile. 99 146 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00623 Car10g00391 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00399 Car-Chr1:2285653 Car10g00391 Car-Chr10:1943234 2.59E-07 dispersed
Car05g00282 Car-Chr5:1566450 Car10g00391 Car-Chr10:1943234 2.47E-104 dispersed
Car10g00391 Car-Chr10:1943234 Car14g01014 Car-Chr14:8520047 8.23E-11 dispersed
Car10g00391 Car-Chr10:1943234 Car02g00898 Car-Chr2:6373712 0 wgd
Car10g00391 Car-Chr10:1943234 Car05g00623 Car-Chr5:3704738 4.01E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4168 PF00643 zf-B_box 7.60E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00391 - - csv:101214816 650.588