Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00391 AAACCAAATCCAAAGCGCACCAAATATCTCTCCCAGCTCCTCACCCAACACACCCAGCACCCTGTTTCTTGGCGGGAGACTCTGGAGGCTTCTGAATTCACAACGCCATCAACCATGGGAATTCAGGGAGACGGTGTTGTGAAGGGTTTCGGCGGCGGATGGGGCGTGGTCGCTAAACCCTGCGACTCCTGCAAGACAGGGCCTGCAGCCGTATATTGTCGACCTGACTCTGCTTTCCTCTGCCTTTCCTGTGACGCAAAAATTCACTGCGCTAATAAGTTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAGGCTCCTGCTGTGGTCATGTGCAAGGCCGATGCTGCAGCTCTGTGTGTTACCTGCGATGCCGATATTCATTCCGCTAACCCATTGGCACGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCCGAGTCAATGATCAAATCCTCTTCGGGTTTCAATTTTCTCCTGCCCACTGAAACCAACGCCAGTGGCTGCCACGGTGCCAATCAACACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCACCTTTCAACTCTAAGCTCGTGGACGAGCCTGAAATCAAGCCACCTGGTCATGATCATATGTTCTTCACTGAAATGGATTCCTTTATTGATTTTGACTACCCAAACCCAGTCAACAACCACAGCGCGATTAACGACAGCGTCGTCCCTGTTCAAACCAAGCCACTCTGTACTCCGGTGATCAATACCCACTCCCCAGAAAATTGCTACGACATCGATTTTTGCAGATCCAAGCTCAATTCATTCGGCCATCAACCACTATCCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGAAGTCGGAGTTGTCCCAGAAGCGAATTCGATGTCCGACATATCATACCCATTGGGTCAAAGCGTGAGTAGTGGGGGGGACTCGGGGCTACCGGTATCGGGATCCGGCAACCCAGCGACTCAATTATGTGGAATCGACCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTACGCTTCAAGAAAAGCTTACGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGACACGCTATCAGAGGTTGAAGAAATGTACGGGTCGGCTGGTTCGTCTCTGTTCTTAGCAGACACCCAGTACGGCGTGGTACCGACGTTTTAA 1239 52.62 KPNPKRTKYLSQLLTQHTQHPVSWRETLEASEFTTPSTMGIQGDGVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESMIKSSSGFNFLLPTETNASGCHGANQHEEVEVASWLLSNPPFNSKLVDEPEIKPPGHDHMFFTEMDSFIDFDYPNPVNNHSAINDSVVPVQTKPLCTPVINTHSPENCYDIDFCRSKLNSFGHQPLSLSHSVSSSSLEVGVVPEANSMSDISYPLGQSVSSGGDSGLPVSGSGNPATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTLSEVEEMYGSAGSSLFLADTQYGVVPTF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1943234 1944565 + Carg15258-RA Car10g00391 155293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00391 412 ProSiteProfiles CCT domain profile. 339 381 IPR010402 GO:0005515
Car10g00391 412 Pfam CCT motif 339 381 IPR010402 GO:0005515
Car10g00391 412 ProSiteProfiles Zinc finger B-box type profile. 61 103 IPR000315 GO:0008270
Car10g00391 412 Pfam B-box zinc finger 101 146 IPR000315 GO:0008270
Car10g00391 412 ProSiteProfiles Zinc finger B-box type profile. 99 146 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00391 - - - csv:101214816 650.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00623 Car10g00391 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00399 Car-Chr1:2285653 Car10g00391 Car-Chr10:1943234 2.59E-07 dispersed
Car05g00282 Car-Chr5:1566450 Car10g00391 Car-Chr10:1943234 2.47E-104 dispersed
Car10g00391 Car-Chr10:1943234 Car14g01014 Car-Chr14:8520047 8.23E-11 dispersed
Car10g00391 Car-Chr10:1943234 Car02g00898 Car-Chr2:6373712 0 wgd
Car10g00391 Car-Chr10:1943234 Car05g00623 Car-Chr5:3704738 4.01E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1077 . . . . . . . . Cmo10g00449 Cmo11g00414 Cma05g00679 . Car05g00623 . Sed08g0523 Cpe04g01287 Cpe18g00605 Bhi02g00794 Tan09g1648 Cmetu02g0351 . Hepe09g0511 . . Cla11g01201 Cam11g1260 Cec11g1272 Cco11g1273 Clacu11g1418 Cmu11g1240 Cre11g1658 . . Cone11ag0169 Cone18ag1317 Lsi06g01109 Csa02g00615 Chy05g00918 Cme02g01520 . . . Bda09g00945 Bpe08g00686 Bpe13g01202 Bma01g00353 Bma06g00924 Sed03g2846 Cmo05g00714 . Cma10g00418 Cma11g00415 Car10g00391 . Cpe11g00603 . Bhi06g01274 Tan08g0825 Cmetu05g0666 . Hepe08g2141 . . Cla06g01299 Cam06g1444 Cec06g1497 Cco06g1497 Clacu06g1404 Cmu06g1365 Cre06g2174 Lsi11g00747 Csa01g02115 Chy02g02191 Cme05g01392
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00282 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Car02g00898 . 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 8.8e-58 221.5
Car10g00391 CCT 58 412 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.8e-55 213.8
Car02g00898 . 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 2.1e-64 243.4
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.7 2.5e-92 336.3
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 7.1e-87 318.2
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 3.5e-86 315.8
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 4.6e-86 315.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car20g00702 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.2 8.7e-44 174.9
Car16g00643 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.9e-56 214.9
Car04g00690 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.7e-56 214.2
Car07g00389 CST 1 139 C2C2-CO-like Transcription Factor Family AT2G21320 66.9 2.3e-48 189.1
Car03g00645 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Car16g00643 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.6e-58 220.7
Car04g00690 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Car07g00389 CST 1 138 C2C2-CO-like Transcription Factor Family AT4G38960 71.8 2.4e-51 199.1
Car03g00645 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Car12g00406 CST 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4168 PF00643 zf-B_box 7.60E-07 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00391 Car_Chr10 FPKM 19.268116 19.946316 19.701063 17.924383 34.209942 29.333103 26.074409 32.186646 31.234718 27.770714