Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00411 ATGGCGAAATCCACATCGCAACAACTTCAGATTAGAGAATCGAACAACAATGTAAATAAAAATATTGTAATGAAGACGAAAACAAAGCGAACTCGGAGGAGCGTACCGAGAGATTCGCCTCCTCAACGAAGCTCCATTTACCGCGGCGAAGCGGCAGCCCATGCGTACGACCTTGCAGCACTTAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGCTATCTACGTACCAAAAAGAGCTGAAGGAAATGGAGGGACAGTCGAGGGAAGAATACATTGGGTCGTTGAGAAGAAAAAGTAGCGGGTTTTCTCGTGGGGTTTCCAAATACAGAGGCGTTGCTAGGCACCATCACAATGGTAGATGGGAAGCTCGAATTGGCAGGGTGTTTGGCAATAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCCACGGCGTACGATATCGCAGCCATAGAATACCGTGGACTCAACGCCGTCACCAATTTCGACCTGAGCCGTTACATTAAGTGGCTAAAACCCTGCAACGACGTCGTTTACGCCAGCGACCACACCCTCAACATTGACTCTGTCCTCCCAAGCCCTAAACAAGAACTGGACCTAGGGCTCTTCCCGGCGGACCAAAACCAGAGCAGCACCGATTCGGCGACGGCGGAACCAATTGCCTTACCTCCATCCCACAGACCGACCACCACCACCACCACGTCAGCTCTCGGCCTCCTGCTACAATCTTCAAAGTTCAAGGAAATGATGGAGATGAATTCGGCAACGGAGTGTCCGTCGACGCCGTCGTCAGCGGAGAAGCTCGAACGGCGACGGTGCTTGTTTCCCGATGATGTTCAGACTTTCTTCGCCTGCGATAGCTCGGGATCTTACTGCTATGGAGAAGCGGATGATGCAATTTTTAGCGATTTCAACTGTTTCGTACCGCCGCCGCCGTCGCATTACGATTTTGACGATTAG 972 50.51 MAKSTSQQLQIRESNNNVNKNIVMKTKTKRTRRSVPRDSPPQRSSIYRGEAAAHAYDLAALKYWGQETILNFPLSTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPCNDVVYASDHTLNIDSVLPSPKQELDLGLFPADQNQSSTDSATAEPIALPPSHRPTTTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSAEKLERRRCLFPDDVQTFFACDSSGSYCYGEADDAIFSDFNCFVPPPPSHYDFDD 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2061374 2063381 - Carg10016-RA Car10g00411 155313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00411 323 MobiDBLite consensus disorder prediction 1 24 - -
Car10g00411 323 MobiDBLite consensus disorder prediction 210 236 - -
Car10g00411 323 MobiDBLite consensus disorder prediction 1 46 - -
Car10g00411 323 Pfam AP2 domain 108 159 IPR001471 GO:0003700|GO:0006355
Car10g00411 323 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00489 Car-Chr8:3113954 Car10g00411 Car-Chr10:2061374 2.10E-77 dispersed
Car10g00411 Car-Chr10:2061374 Car11g00872 Car-Chr11:5425205 2.35E-08 dispersed
Car10g00411 Car-Chr10:2061374 Car17g00860 Car-Chr17:7254275 3.01E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4170 PF00847 AP2 1.80E-11 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00411 K09285 - csv:101219103 547.74