Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car10g00420 | ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCGTTGAAGAACTTGGACGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCTTGCAATGAATGTGGTTTTCCAGTCTGCAGACCCTGCTATGAGTATGAACGAAGAGAAGGAAGCCAACTCTGCCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCAAGGGTCGAGGGAGACGACGATGAAGAAGACATAGATGACATTGAACATGAGTTCAACATTGATGATGAAAGGAACAACCACAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGCCTTGATGATGATGAAAATGCACAGTATGGAAGAACACAGCCAGTAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTATCTTCGTCGCTGCACAAACGTGTGCATCCATATCCGGTTTCTGAACCAGGGAGTGCAAGATGGGATGAAAAGAGAGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGAATGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCTAGCAAAATTAATCCTTACCGGATGGTTATTGTGGCACGGCTCGTTATTCTCGCCTTCTTCCTTCGTTATCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTAACTCTAAGATATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTAGACATCTTCGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGGTTTCATGCTATGTTTCGGACGATGGAGCGTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCAAGGAAATGGGTCCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTGAAGGAGCGACGAGCAATGAAGAGAGAATATGAAGAGTTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCTACAGAGGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAACACAAAAGATCATCCCGGTATGATCCAAGTTTTTCTAGGTCACAGTGGAGGCCTTGATGCCGAAGGGAATGAACTCCCCCGCCTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCCGGTGCCATGAATTCCTTGATCCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTGCAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTATATGTTGGCACAGGGTGTGTCTTTAGGAGGCAAGCCTTATATGGTTATGAACCCCCAAAAGGTCCTAAACGCCCAAAAATGGTAAGCTGCGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGAGCTCTAAAAGTGGGGTCGATGGAGATGCTGCAGTGATGGAAGATGACAAGGAGCTACTAATGTCGCAAATGAATTTTGAAAAGAAATTTGGACACTCATCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGTGGTGTTCCACCCTCCTCCGGTCCAGCAGCCTTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGATTTAAGATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAATTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCGCTCGGGTCCATTGAAATTTTTTTCAGCAACCACTGCCCTGTTTGGTATGGCTATAAGGGTGGAAAGCTAAAGTGGCTAGAGAGATTTGCATATGTCAACACCACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTTACGGATAAGTTTATCATGCCACCGATCAGCACATTTGCAAGTTTCTACTTCATTGCATTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAACTCAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGACTTTGGAGAATTATATGCCTTCAAATGGACCACTCTGCTAATCCCTCCCACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCGGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCGTTTGTGATGAAAACAAAGGGACCTGACACAAAGCAATGTGGACTAAATTGCTGA | 3096 | 44.28 | MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGLDDDENAQYGRTQPVNGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSARWDEKREGWKDRMDDWKLQQGNLGPEPDDANDPDMAMNDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLTLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKVSCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNSLIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKSSKSGVDGDAAVMEDDKELLMSQMNFEKKFGHSSIFVTSTLMEEGGVPPSSGPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASFYFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC | 1031 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2110337 | 2115374 | + | Carg10007-RA | Car10g00420 | 155322 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car10g00420 | 1031 | Pfam | Zinc-binding RING-finger | 27 | 103 | IPR027934 | - | |
| Car10g00420 | 1031 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 110 | IPR013083 | - | |
| Car10g00420 | 1031 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 83 | IPR001841 | - | |
| Car10g00420 | 1031 | CDD | mRING-HC-C4C4_CesA_plant | 35 | 85 | - | - | |
| Car10g00420 | 1031 | Pfam | Cellulose synthase | 326 | 1025 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
| Car10g00420 | 1031 | SUPERFAMILY | RING/U-box | 21 | 107 | - | - | |
| Car10g00420 | 1031 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
| Car10g00420 | 1031 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 339 | 855 | IPR029044 | - | |
| Car10g00420 | 1031 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 431 | 617 | IPR029044 | - | |
| Car10g00420 | 1031 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] | 1 | 1031 | - | - | |
| Car10g00420 | 1031 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1 | 1031 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01268 | Car-Chr4:7351698 | Car10g00420 | Car-Chr10:2110337 | 0 | dispersed | |
| Car07g01266 | Car-Chr7:7873365 | Car10g00420 | Car-Chr10:2110337 | 0 | dispersed | |
| Car09g01056 | Car-Chr9:9352842 | Car10g00420 | Car-Chr10:2110337 | 0 | dispersed | |
| Car10g00420 | Car-Chr10:2110337 | Car18g00403 | Car-Chr18:2468004 | 0 | dispersed | |
| Car13g00472 | Car-Chr13:7010740 | Car10g00420 | Car-Chr10:2110337 | 0 | dispersed | |
| Car14g00838 | Car-Chr14:4946961 | Car10g00420 | Car-Chr10:2110337 | 0 | dispersed | |
| Car20g00807 | Car-Chr20:4934481 | Car10g00420 | Car-Chr10:2110337 | 0 | dispersed | |
| Car10g00420 | Car-Chr10:2110337 | Car02g00866 | Car-Chr2:6208790 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car10g00420 | K10999 | - | csv:101214842 | 2046.94 |