Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00422 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGAGCTTTCATCCTCATCTTCCTCATCATCTTCATCTTCTTTTGCCTTTGGTTCGTTTTCCTCTGATCTCCCCACCCTCCGTCCACATGGCGCTTCTTCCTCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGGTATACCCGAGATCAGCTTTTGCAGCTTCAGGAAGTCGTGGAAGTTCCAGATGATATACTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATGTAAGTATGTTGGTCGTTCACTTGATTGATCTTTTTCTTGCTTTCTCTTGGGGGTGCTGGAAGCAACTTAATCCATCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGATAGGTCCAGGGAAACAATTCGGGATAGAGATTTTGGTGGTCATTTTGACTCTAGACAGCAAGATGCAAATCAATTGAATCGTCAAGATCCTCACTCATCTTGGACCCGAACCACTCCTAACCAAGGGGGAGGACCCCCTGCTTTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGAACTCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTCGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTTATTTTTGACAAGGCCGTTCTTGAACCCACATTCTGCCCCATGTATGCTCAATTATGTTCCGATCTGAATCAGAAGCTACCACAATTTCCGTCTGATGAACCTGGTGGTAGAGAAGTTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCTGACAAGTTGAGGGAAGAGCTTAGGCAGATGACTGCCCCTGAGCAAGAGAGCGAACGCAGGGATAAAGACAGACTTTTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAAATCGTCCACCACATTGTGCAGGAACTTTTAGGACCAGATAACAAATCTTGTCCTGCAGAAGAAAATGTTGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGACGAGAACACGAAGTCACGACGTATAAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGACTGAAGTTCATGGTTCGTGATGTTCTTGATTTGCGTGCCAACAATTGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATACAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATGAGAAATAATCGTGGCGTTGTGTCTGGTTCTCCTGGGAACACCAGCCCTGGGGGCTTTCCTATCAATAGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAACTAGGAAGATGCCTGGTATGCCAGGCATGGATAATGACAATTGGGAGGTACATAGGACCCGACCTATACCAAGGGGGGCAGATGGATCTGGGCGTGGCTCAGCATCGTTCGTTGGCAAAGGATCAGCGTTGAATGCAAGGCTACTTCCCCAGGGTACTGGTGGGCTTATTAGTAATAAGAATAGTGCTCTATTGCAGGGTGCAGGTGCATCTACTACTCGTCCTGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTGCCGCAGCAACAGTTCCTCCACCTGCAGAGCGACCACAGGTTCCAGCTGCATCTTTAAAACAAGATGACCTCAGAAAGAAAACTCACTCTCTCCTTGAAGAATATTTCAGTATCCGGATTTTGGATGAAGCCTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTAAAAGAAGCCATTTCCTTGGCCCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTACTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACATTGGGACTGGATGCTTGCTTTATGCTTCCATGCTCGATGACGCAGCCATTGATTTACCAAAAGCACCCATCAATTTTGGTGAGATAATTGGGAAACTTGTTATATCTGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGACGACAGGTTTAGGAAAGATATATTTGATGCTGTTTTGAAGACGATTAGTTCCAATGTGTCTGGACAAGGATTATTGGACTCGTTGGCATCCGATATTGAAGGCTGTCGAAATCTGGCATATTAA 2448 45.63 MQQGDQTVLSLRPGGGRPRLLGPRFELSSSSSSSSSSSFAFGSFSSDLPTLRPHGASSSSFSVKAGDSRFEGRERVRYTRDQLLQLQEVVEVPDDILKIKRDIEVEIFGEEQSWSRGESNVSMLVVHLIDLFLAFSWGCWKQLNPSQNRYSEPDNRDWRGRSAQFSASGEDRSRETIRDRDFGGHFDSRQQDANQLNRQDPHSSWTRTTPNQGGGPPALIKAEVPWSARRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREVTFKRVLLNICQEAFEGADKLREELRQMTAPEQESERRDKDRLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKSCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHTEAEKNLGLRPGATVNMRNNRGVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVHRTRPIPRGADGSGRGSASFVGKGSALNARLLPQGTGGLISNKNSALLQGAGASTTRPVNFGHGLEPSGQVHKPIAAATVPPPAERPQVPAASLKQDDLRKKTHSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDIGTGCLLYASMLDDAAIDLPKAPINFGEIIGKLVISGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASDIEGCRNLAY 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2117841 2123846 + Carg10005-RA Car10g00422 155324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00422 815 MobiDBLite consensus disorder prediction 188 213 - -
Car10g00422 815 MobiDBLite consensus disorder prediction 1 42 - -
Car10g00422 815 Pfam MA3 domain 650 762 IPR003891 -
Car10g00422 815 Pfam MIF4G domain 240 465 IPR003890 GO:0003723|GO:0005515
Car10g00422 815 ProSiteProfiles MI domain profile. 649 771 IPR003891 -
Car10g00422 815 MobiDBLite consensus disorder prediction 171 187 - -
Car10g00422 815 MobiDBLite consensus disorder prediction 148 219 - -
Car10g00422 815 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00895 Car-Chr8:6000321 Car10g00422 Car-Chr10:2117841 1.60E-65 dispersed
Car09g00352 Car-Chr9:1924537 Car10g00422 Car-Chr10:2117841 0 dispersed
Car10g00422 Car-Chr10:2117841 Car17g00063 Car-Chr17:343392 3.11E-08 dispersed
Car01g01290 Car-Chr1:11635799 Car10g00422 Car-Chr10:2117841 0 wgd
Car10g00422 Car-Chr10:2117841 Car02g00864 Car-Chr2:6197969 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00422 K03260 - csv:101207520 1330.85