Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00431 ATGGCGGAGCGTCAATGTTTTGAAACTGACCAACTTGGAAGCTCGAAGGTTACTGCTGGGCTAGAGGACGACGAAGAAGAAATGGAAGATTCGGAGGATGAATCAGAGGTGGAGTTGGAAGATGGAGGAGCGTTGAATGAGTTGCAACCGGTTGAGTCGAGGATCGATTCGTCGGTTACTGAAGCTGCGGCGAGGGAGTCTCCTTCTGAAACCCTAACGGCGCCTTCTGCGAATCACTCCTCGGAGAACGGTTTGCCCGTCGATTCTGCTGCGCAGTCACTCGAAGAAGCTGAATTGAAGCAATCTCCATCTTCCTGCCATGAGCCTTTGGCAGTTGAAGCAACCCAGACAGATAAGGTGCAAGAACAAAGCCAGCTTCAGTTGTCAATATATAAAGGACCTGATCCGGAACAATCACCAACTTCTGTTACCCAGTCTATCTCATCCTCCGCAAGTCCAAGTTTATCCAAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCTTCCAACCATAAAACTGCATCATCGGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATATGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCGCGTAGCTATTACAAGTGTACATATTCTGAATGCTGTGCTAAGAAGATAGAATGTTGTGATCACTCAGGCCATAGAACAGAGATTGTTTACCGAAGCCAACATAGCCACGATCCACCTAGGATGATTAGCAACCCCAAGGAAAGACAGCTTGTGCCATATGTTGAGCCTGTAGTTAAGCAAATCATTACAGAACATTCCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCTAAAGAACCTTCACGGGAAACAGCTTCAGTCCTTGTAAGGAAACGACAGTACTCGAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGATGGCGAACCAGAGACAAAACAAAAAGTTAAGAAAAGTAGTGCGGGATATTCAGGTACTCCCTTAAAACCTGGAAAGAAGCCGAAATTTGTGGTGCATGCAGCGGGTGACGTGGGAATCTCGGGCGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAGTCCTCATCCCAGGAACTACTACCGCTGTACCTCTGCTGGGTGTCCAGTCCGTAAGCACATCGAATCAGCAGTAGAAAATCCATATGCAGTGATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCGAAGAAGCGACACAGTCCACCAAGTGCTCCTCATATAGCTGCTGCAGCTCCAGCCTCCATGAGCAATACGCAACCGAAGACAACAGACTTAACCGAGAACCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAATTGACTGGTGAGGCCTTGGAGCTTGGAGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGTATCGGATTTGAAATCAAGCCTTGCTGA 1521 46.35 MAERQCFETDQLGSSKVTAGLEDDEEEMEDSEDESEVELEDGGALNELQPVESRIDSSVTEAAARESPSETLTAPSANHSSENGLPVDSAAQSLEEAELKQSPSSCHEPLAVEATQTDKVQEQSQLQLSIYKGPDPEQSPTSVTQSISSSASPSLSKHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGHRTEIVYRSQHSHDPPRMISNPKERQLVPYVEPVVKQIITEHSRRVINDSDPPTPSKEPSRETASVLVRKRQYSSDSDGNDEFKIKDENDGEPETKQKVKKSSAGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGSPHPRNYYRCTSAGCPVRKHIESAVENPYAVIITYKGVHDHDMPVPKKRHSPPSAPHIAAAAPASMSNTQPKTTDLTENQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2149622 2153640 - Carg09996-RA Car10g00431 155333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00431 506 Coils Coil 21 41 - -
Car10g00431 506 MobiDBLite consensus disorder prediction 161 175 - -
Car10g00431 506 MobiDBLite consensus disorder prediction 286 310 - -
Car10g00431 506 MobiDBLite consensus disorder prediction 108 159 - -
Car10g00431 506 MobiDBLite consensus disorder prediction 1 215 - -
Car10g00431 506 ProSiteProfiles WRKY domain profile. 362 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car10g00431 506 MobiDBLite consensus disorder prediction 279 354 - -
Car10g00431 506 MobiDBLite consensus disorder prediction 176 193 - -
Car10g00431 506 MobiDBLite consensus disorder prediction 51 88 - -
Car10g00431 506 Pfam WRKY DNA -binding domain 369 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car10g00431 506 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car10g00431 506 MobiDBLite consensus disorder prediction 311 336 - -
Car10g00431 506 MobiDBLite consensus disorder prediction 22 41 - -
Car10g00431 506 ProSiteProfiles WRKY domain profile. 195 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00431 Car-Chr10:2149622 Car14g00022 Car-Chr14:149155 7.72E-16 dispersed
Car10g00431 Car-Chr10:2149622 Car02g00856 Car-Chr2:6165402 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4171 PF03106 WRKY 1.60E-23 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00431 - - bhj:120071353 748.043