Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00432 ATGTCGGACGAGGAGCACCACTTTGACTCTAGGGCCAACGCCAGAGAGCCCGAGACTTACCCTGAGGAAGCTAGAACCTGGCTACATCAAATCTCACACAAAGCTATCAACATCAAAGATCTCCTCAAAGATGTCGTTGAAGTTTCTACTTCAAAACCTGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAGACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGCGAGGATGGTTTTGATGGTCTGACGCTCCCCAAGGATGAAAATCTGCGTAGGCAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAGAAAGGTTGTTATTAAGGTCATTGAAGCTCATCACTATCGAGTGGCTGTTGTTTCCTTGAAAAAGGGCGAGGGCTTGGCCCGACCGATATGA 543 45.49 MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAKCHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGFDGLTLPKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPRKVVIKVIEAHHYRVAVVSLKKGEGLARPI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2154764 2158543 - Carg09995-RA Car10g00432 155334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00432 180 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 89 146 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car10g00432 180 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 53 60 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car10g00432 180 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00432 Car-Chr10:2154764 Car18g01034 Car-Chr18:10675800 1.21E-58 dispersed
Car01g01279 Car-Chr1:11589971 Car10g00432 Car-Chr10:2154764 2.98E-62 wgd
Car10g00432 Car-Chr10:2154764 Car02g00855 Car-Chr2:6161130 3.76E-65 wgd
Car10g00432 Car-Chr10:2154764 Car05g00295 Car-Chr5:1630760 7.60E-59 wgd
Car10g00432 Car-Chr10:2154764 Car09g00361 Car-Chr9:1964282 3.35E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00432 K03263 - tcc:18587850 193.356