Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00439 ATGGCGGAGAAGGACAGAGACGGTCATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCTAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAACATGGCGATGAAGGTTGTTGGGAAGGAGAAGGTCATAAAAGTAGGTATGATGGAGCAGATCAAGAGAGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATTGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGGGAACTGTTTTCCAAAATTGCTAGAGGTCGATTGAGAGAGGATGTGGCTAGAGTTTACTTTCAGCAGCTGATTTCTGCGATCGATTTCTGCCACAGTCGGGGGGTTTACCATCGCGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCAGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGTACGCCAGCCTACGTTGCGCCGGAGGTTATCGGGAAGAACGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTCGCAGGATTTCTCCCATTTCAGGACGACAATATTATGGCCATGTACAGGAAGATTTACAAGGGAGACTTCAAATGCCCGCCGTGGTTCTCATCGGATGCCCGTCGACTAATCACCAAACTCCTCGATCCAAATCCGAATACCAGAATTACAACTTCGAAGATCATGGAGTCGTCCTGGTTCAGGAAATCTGTACCAAGAACTGTGAAAACGAAAGAGGAGCAGGAATTCGACGAGAGCAACGAGAAACTAAAGCAATCTGAGACTCTGAATGCATTCCACATAATTTCGTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAAAAAGAGGAGCTGAGATTTGCGACGACGAGGCCGGCCAGCAGTGTGATATCGAAGCTGGAGGAGGTCGCGAAAGCGGGGAAATTCAACGTCAAAAAGAGCGAATCGAGAGTCAGACTACAGGGCCAGGAGTGCGGAAGAAAAGGGAAACTGGCGGTGGCTGCGGAGATCTTCGCCTTGACGCCGTCGTTTCTTGTGGTGGAGGTGAAGAAGGATCATGGCGACACCCTCGAATACAACCAATTCTGCAGCAAAGAGCTCCGGCCGGCACTCAAAGACATTGTCTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 49.5 MAEKDRDGHSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTNMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIARGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKNGYNGAKADLWSCGVILYVLLAGFLPFQDDNIMAMYRKIYKGDFKCPPWFSSDARRLITKLLDPNPNTRITTSKIMESSWFRKSVPRTVKTKEEQEFDESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFNVKKSESRVRLQGQECGRKGKLAVAAEIFALTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2206179 2207471 + Carg09987-RA Car10g00439 155341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00439 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Car10g00439 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Car10g00439 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Car10g00439 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Car10g00439 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00439 430 Coils Coil 280 300 - -
Car10g00439 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00439 Car-Chr10:2206179 Car12g01122 Car-Chr12:10933078 0 dispersed
Car14g00954 Car-Chr14:5778599 Car10g00439 Car-Chr10:2206179 1.77E-167 dispersed
Car01g01275 Car-Chr1:11561646 Car10g00439 Car-Chr10:2206179 0 wgd
Car10g00439 Car-Chr10:2206179 Car02g00850 Car-Chr2:6128779 0 wgd
Car10g00439 Car-Chr10:2206179 Car05g01160 Car-Chr5:11060904 0 wgd
Car10g00439 Car-Chr10:2206179 Car09g00364 Car-Chr9:1988779 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89130 PF00069 Pkinase 1.90E-73 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00439 - K07198 csv:101211847 819.69