Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00440 ATGAAACAGGAGTTTTCAAGTATGATTTTAAAAGCCAGGACGAATGCAATTGGGGAAGATTGCATCACTTGCCCATTCCCTGCCAGTGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTTGTGCTTCAGCAGAATGGCCACTGGGGTGCTCAAATTTATGCTAATCACCATCGTATTTGGCTCGGATCATTCAAGTCGGAAGACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACAATTGAAGAGCCTAACTTTCAGAATCTTTACACTACAGAAACTTTGCTTAGTATGTTAAAAGACGGTTCTTACAGAACTAAATTTGCTGAATATTTGAGGGATTGTTTGGAAAGCGCACAAACAGCCAGCCCCTCTGCAGAAAAGCTACATAACAATGGACGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGCAAGTTAAACAGATTGGTCATCCCAAAGAAATACGCTGTTAAATACTTCCCTCACATACCAGCTAGCACGATAGATAACGTGAAACCTGCTGATGATGATTGTGACGTGCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTACGTTTTTACGCGAGGTTGGAATCGGTTTGTGAAAGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATGCTAACACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACCATGGTAGCTTGACTGAGAATGAAATCACAATCAGCGAAATGCAGCTAGATTTGAGTCATGAAGAAGGTAATGGATCAGTGTCGCCTAAGCATGTCGACGATGAACTAAAAGATGATCTTGAAGTCTCAGGCTTCAAACTGTTTGGAGTGCATATTAAGGGAAAGTAA 1011 41.05 MKQEFSSMILKARTNAIGEDCITCPFPASGCSRQGRSLTSKFKGVVLQQNGHWGAQIYANHHRIWLGSFKSEDEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQNLYTTETLLSMLKDGSYRTKFAEYLRDCLESAQTASPSAEKLHNNGRTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHIPASTIDNVKPADDDCDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDANTTFCVVDVKNRDNHGSLTENEITISEMQLDLSHEEGNGSVSPKHVDDELKDDLEVSGFKLFGVHIKGK 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2210128 2211138 - Carg09986-RA Car10g00440 155342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00440 336 ProSiteProfiles AP2/ERF domain profile. 41 96 IPR001471 GO:0003700|GO:0006355
Car10g00440 336 Pfam B3 DNA binding domain 162 261 IPR003340 GO:0003677
Car10g00440 336 ProSiteProfiles B3 DNA-binding domain profile. 162 279 IPR003340 GO:0003677
Car10g00440 336 Pfam AP2 domain 40 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00440 Car-Chr10:2210128 Car11g00706 Car-Chr11:4034084 1.08E-97 dispersed
Car10g00440 Car-Chr10:2210128 Car02g00849 Car-Chr2:6118793 4.39E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4172 PF02362 B3 1.00E-24 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00440 K09287 - csv:101212246 577.015