Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00442 ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTCAACTCTCTCTTAAACCACTCCCAAATCTCTCTCCAGGACCTCCACGCCGACGCTCCCCACCATTTGAATCCCCCACCGCCGCAGATCCCGGCGTCTCAGCTCCACCATTTTGATCCCGCCGCTGCCGCCTCCCACGACGATTTCCTCGAGCAAATGCTCAACACAATCCCCTCCTGTTCCTGGCCCGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAGCCGTCAAGAGATATCTCCGACGACCACCACCAGAGCCACATCACTGCTACATCTCCGGCTGCCAAGGCCGCCGTCATGCTCCAGCAACAGCTTCTCTTGAACAGAGGAATCTCCGTCTCCGCTGGAAATGGCGTCGCCGACCATGGTCTCCCACCTATGCCTCTCTCCCTCGGAAATGCCGACTTAGACCGCTCCCAAAACGACGTCGTCGAGGGATCCTGCTTCCGCACACCGAACTCGGGAGGTTCCATTCAATCGCATAGCTTCGGAGCTCCAGGGAACGGGATGAGTCAAACTCCGGCCGGTGGTTCAGTCGGAGTTTCTCCATCTCAGCCGAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACAGACCCACACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCACTGCAAGAACTCGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTAAGCATGAGCAGGTTGGGAGGTGCAGCAGCTGTGGCTCCTCTCGTTGCTGACGTGTCATCTGAGGGAGGTGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGGTGGTGGTCGGAATTCGAACAATGGCGGGGGTGGTGGAAACCAAACGGCGTCGTCGAATGATAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATCTGCAGGGGAAAGGGTTGTGTCTTATGCCGATCTCTCTGGCGACGGCGATTTCGACATCCACTTGTCACACTAGGAATCCGATGATGAACGGCGGTGGTCAGCATCCGGTGATGGGGACGAATGGAGAAGGGCCGACGTCGCCAAGCATGTCAGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTTAAGGATGCCGCCTCCGTATCGAAGCCGTGA 1263 56.37 MQPCSREMQTFNSLLNHSQISLQDLHADAPHHLNPPPPQIPASQLHHFDPAAAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDHHQSHITATSPAAKAAVMLQQQLLLNRGISVSAGNGVADHGLPPMPLSLGNADLDRSQNDVVEGSCFRTPNSGGSIQSHSFGAPGNGMSQTPAGGSVGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGGRNSNNGGGGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHTRNPMMNGGGQHPVMGTNGEGPTSPSMSVLTVQSTSMGNGSVKDAASVSKP 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2224460 2226875 - Carg09984-RA Car10g00442 155344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00442 420 PANTHER TRANSCRIPTION FACTOR BHLH69 47 376 - -
Car10g00442 420 MobiDBLite consensus disorder prediction 167 208 - -
Car10g00442 420 MobiDBLite consensus disorder prediction 301 328 - -
Car10g00442 420 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 376 - -
Car10g00442 420 MobiDBLite consensus disorder prediction 376 399 - -
Car10g00442 420 MobiDBLite consensus disorder prediction 290 328 - -
Car10g00442 420 MobiDBLite consensus disorder prediction 167 216 - -
Car10g00442 420 Gene3D - 208 270 IPR036638 GO:0046983
Car10g00442 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Car10g00442 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 273 IPR036638 GO:0046983
Car10g00442 420 Pfam Helix-loop-helix DNA-binding domain 218 263 IPR011598 GO:0046983
Car10g00442 420 SMART finulus 219 268 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00442 Car12g01123 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00421 Car-Chr4:2404628 Car10g00442 Car-Chr10:2224460 8.44E-21 dispersed
Car10g00442 Car-Chr10:2224460 Car12g01123 Car-Chr12:10941072 1.12E-112 dispersed
Car16g00289 Car-Chr16:1789643 Car10g00442 Car-Chr10:2224460 2.71E-20 dispersed
Car10g00442 Car-Chr10:2224460 Car02g00847 Car-Chr2:6107613 0 wgd
Car10g00442 Car-Chr10:2224460 Car05g01161 Car-Chr5:11070798 2.47E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4173 PF00010 HLH 1.60E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00442 - - csv:101211609 687.567