Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00501 ATGGCCAGCTGCCTCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTACCGAATTACAATTTATATAGTTGTAACGGACCTGATTTTCAAGGTGATTTTGGATCGTCGTCGTCGTCTTCATCATCATCGAAATGTAATAACAACAAGATGGAAATTCGAGCAAACACAACAATGGGAACAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGAGAAGCTTTCAGTACTGCAGCCAAGAACTGGGCACATTATCCTCGTATACCCTTTTGGTCGGATGTTGGAAACCAGCAATCCAATGAAGCTAGATGA 546 43.41 MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSSKCNNNKMEIRANTTMGTEERVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPRIPFWSDVGNQQSNEAR 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2522223 2524438 + Carg09923-RA Car10g00501 155403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00501 181 Pfam YABBY protein 9 168 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00501 Car-Chr10:2522223 Car15g01044 Car-Chr15:8220769 3.73E-49 dispersed
Car20g00118 Car-Chr20:663723 Car10g00501 Car-Chr10:2522223 2.43E-23 dispersed
Car10g00501 Car-Chr10:2522223 Car11g00415 Car-Chr11:2339258 8.05E-85 wgd
Car10g00501 Car-Chr10:2522223 Car12g01175 Car-Chr12:11290190 9.30E-81 wgd
Car10g00501 Car-Chr10:2522223 Car05g01205 Car-Chr5:11394486 3.21E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4176 PF04690 YABBY 3.60E-68 CL0114 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00501 K25796 - cmos:111461521 370.163