Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00504 ATGAAGCGGGTATCTCGAAAAATTGGGAAGTATGAGATGGGGCGGACTGTCGGCGAAGGAACGTTTGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGCGTGGCCATGAAAGTTATGGCCAAAAGTAGCATTCTCAAACACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCATGAGGTATTGGCTAGCCAGACAAAGATATATATAATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGATCTTCATAAGAAGATTCCAGAATTTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTATACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTGTCTCAACAAGGTGTTGAGCTGCTTCACACCACATGTGGAACTCCTAATTATGTTGCGCCTGAGGTGCTTCGTGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCCGGATATCTTCCTTTTTCAGAGTCAGGCCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGTCCCTATTGGTTTTCACCCGGTGTGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCGAATTGAAGAAATCAGAAAAGACCCATGGTTCAGAAGAAACTACATGCCTGCTAAACTAGGAGAAGTTGAGGAAGTAAACTTAGATGATGTACGGGCTGTTTTTGATGGCATTGAGAATGAATATGTAGTTGATCAGTCAGAAAAAAGTGACGATGGTCCGTTGATGATGAATGCATTTGAGATGATAACATTATCTCAAGGGTTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCTAACTTTATAATGTCTACCATTGAAGTAGTGGCAGAAGCAATGGGTTTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGCTTCACAGTTTGCAGCTGTGCTGGAGATTTATGAAGTGGCCCCGTCACTTTTTATGGTGGACGTTCGCAAGGCTGCAGGGGACACTCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAATATAATCTGGAAACCATCAGAGAGTGTAGGGAACTGA 1314 42.62 MKRVSRKIGKYEMGRTVGEGTFAKVKFACNTETGEGVAMKVMAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASQTKIYIILEFVSGGELYDKIDLHKKIPEFESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEVLRGQGYDGAAADIWSCGVILYVLMAGYLPFSESGLPTLNMKINAAEYSCPYWFSPGVKSLIQKILDPNPKTRIRIEEIRKDPWFRRNYMPAKLGEVEEVNLDDVRAVFDGIENEYVVDQSEKSDDGPLMMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSTIEVVAEAMGLNVHTRNFKTRLERRTGHRASQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPSESVGN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2539479 2544963 + Carg09920-RA Car10g00504 155406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00504 437 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00504 437 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Car10g00504 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Car10g00504 437 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00504 437 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Car10g00504 437 Pfam NAF domain 307 366 IPR004041 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00507 Car-Chr5:2937697 Car10g00504 Car-Chr10:2539479 5.37E-42 dispersed
Car10g00504 Car-Chr10:2539479 Car13g00407 Car-Chr13:6590710 0 dispersed
Car10g00504 Car-Chr10:2539479 Car12g00164 Car-Chr12:943512 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89134 PF00069 Pkinase 2.80E-72 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00504 - - csv:101203676 815.453