Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00529 ATGGAGGATAAGAAAGCTCACGTAATTGCTCTTTCGTTCATCGTCTTCCTCATCCTTCTCGTCATTCTGGCTCGAGTCCTCCTGAAATTGTCCAAGCCTTTTTATCTTATTTGCGGGATCGATGTGTCCCTCACCGCCGCTATCCTGATGTATTTGGTGATCAGAAGGCGGTTCAACCGGAGAAGAAAACAGCTCGAGTCGCAGTTAGTAACTGAAGGTCGAGAGCTTCGGATCGAGTACAGTTTCTTGAGGAAGGTCGCCGGAGTTCCGACGAAGTTCAAGTACAAAGAGCTCGAGGAAGCGACGGACTATTTCAGGGCGTTGATAGGGCAAGGATCGTCCGGATCTGTCTTTAAAGGAGTTCTTAAAGACGGTACTGCGGTGGCTGTCAAGCGGATCGAGGGCGAGAATCGAGGAGAGAAAGAGTTCCGTGCGGAGGTATCCGCCATTGCTAGTGCTCAGCATGTAAATCTCGTTCGTCTGATTGGCTACTGTATCAATTCATCTGGACCTCGATTTCTCGTCTACGAATTCGTATCGAACGGATCCTTGGATTGCTGGATTTTCCCCAAAAAACCTAGGCACAAGAATCGTAATCGCCCTGGCGGTTGCTTAGCTTGGGATATGAGATACAGAGTCGCCATTGATGTGGCCAAAGCTCTAGCCTACCTTCACCACGATTGCCGATCGAGAATCTTACACCTCGATGTCAAGCCGGAAAACATCCTCGTAGACGAGAACTACAGAGCAATCGTATCGGATTTCGGACTGTCAAAACTGATGGGGAAAGACGAGAGCCGAATAATGATATCGATGAGAGGGACGAAGGGGTATTTGGCTCCGGAATGGCTATTGGAGAACGGAATCTCAGAGAAATCGGACATATACAGCTACGGAATGGTTCTTCTGGAACTAGTCGGCGGGCAGAGGAACGTGAGCGTAGTTGAGAACGAAGAGGACAGATCTAAGAGGAAATGGCAGTATTTTCCCCGAATCGTGAGTGCAAAATTGAAGGAAGGGAAACTAATGGAAGCTGTGGATAAAAGACTCTTAGAAATGGGAACGATTGACGAGAGAGAGGTACGGAAACTAGTTTGCGTGGGTTTGTGGTGCATTCAAGAGAAGGCTAAGCTTCGGCCGACGATGGCAACGGTGGTGGATATGCTCGAAGGCCGCGTTCCAGTGGAGGAGCCGCCTGATACTCAAATGCTCGTCGTCGATTTATTGTCTGTCGATGAAGAGATGATGAATAGCCATGAGAGGCCGAAGCTTGTTGCATTTGGGGAACGGATGAACGACACAGACCGTCCTTCATCGTCTTCGACGACGAACTCATACGCCTTCTCTGTACTCACCCCCCGGTGA 1365 49.3 MEDKKAHVIALSFIVFLILLVILARVLLKLSKPFYLICGIDVSLTAAILMYLVIRRRFNRRRKQLESQLVTEGRELRIEYSFLRKVAGVPTKFKYKELEEATDYFRALIGQGSSGSVFKGVLKDGTAVAVKRIEGENRGEKEFRAEVSAIASAQHVNLVRLIGYCINSSGPRFLVYEFVSNGSLDCWIFPKKPRHKNRNRPGGCLAWDMRYRVAIDVAKALAYLHHDCRSRILHLDVKPENILVDENYRAIVSDFGLSKLMGKDESRIMISMRGTKGYLAPEWLLENGISEKSDIYSYGMVLLELVGGQRNVSVVENEEDRSKRKWQYFPRIVSAKLKEGKLMEAVDKRLLEMGTIDEREVRKLVCVGLWCIQEKAKLRPTMATVVDMLEGRVPVEEPPDTQMLVVDLLSVDEEMMNSHERPKLVAFGERMNDTDRPSSSSTTNSYAFSVLTPR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2648904 2650268 - Carg09895-RA Car10g00529 155431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00529 454 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Car10g00529 454 MobiDBLite consensus disorder prediction 433 454 - -
Car10g00529 454 Pfam Protein kinase domain 108 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00529 454 ProSiteProfiles Protein kinase domain profile. 103 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00529 454 MobiDBLite consensus disorder prediction 430 454 - -
Car10g00529 454 Gene3D Phosphorylase Kinase; domain 1 67 178 - -
Car10g00529 454 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 453 - -
Car10g00529 454 Gene3D Transferase(Phosphotransferase) domain 1 179 400 - -
Car10g00529 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Car10g00529 454 SUPERFAMILY Protein kinase-like (PK-like) 85 390 IPR011009 -
Car10g00529 454 SMART serkin_6 103 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00529 454 PANTHER RECEPTOR-LIKE KINASE 1 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00529 Car-Chr10:2648904 Car09g00401 Car-Chr9:2225257 4.63E-95 dispersed
Car10g00529 Car-Chr10:2648904 Car12g00321 Car-Chr12:2062608 4.06E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89135 PF00069 Pkinase 2.80E-43 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00529 - - csv:101211041 767.689