Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car10g00536 | ATGGATGCCGTCAGAAACAGAGGACCTTTCAGGGTTTCTGTTTGTGGTCAAGAAGAGCTTGAGCAACTCTCCAGAGATGGCAGTCAGTTTAGCCTCAGCACTGGGATATTGCCCTCTCTTGGTGCTAGAAGCAATCGCAGAGTCAAACTCCGGCGTTTTGTCATTTCGCCTTATGATCATCGATACAGGATTTGGGAGACTTTTCTCGTTGTTTTGGTGGTATATACAGCTTGGGTCTCGCCATTCGAGTTTGGATTCCTCAAGAAACCCCAATCTCCACTTTCCATTACAGATAATGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTGGCTTACCTCGATAAATCCACTTATTTACTTGTCGACGAACCGAAGAAGATCGCTCTGAAGTATGCAAGTTCATGGCTAGTCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACATAAGATCTCCCCTTCACCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGTGCTCTTTTTTCCAGACTGGAAAAAGATAGGAACTATAATTACTTTTGGGTTCGATGTGCAAAACTCGTTTGTGTTACTCTGTTTGCGGTTCACTGTGCTGCATGCTTCTATTATCTCCTTGCTGCTCGTTATCATGACCCAAAAAGGACATGGATTGGAGCATCTATGGAGGACTTTCTTGAGCAAAGTTTGTGGATTAGATATGTCACTTCGATTTACTGGTCTATCACTACCCTAACCACTGTCGGCTATGGTGACTTGCATCCTGTGAATACAAGGGAAATGGTTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAACTTAGTCGTCCATGGTACCAGTAGAACTAGAAAATTCAGGGATACCATACAAGCTGCATCTAGTTTTGCCCACAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACACTCGATTCCTTGCCGAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGTCTACTTGTTTCGTGGTGTTTCAAATGACCTAATTTTTCAACTGGTTTCGGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGACGTGATTTTACAAAATGAAGCCCCAACAGACTTCTATATTCTTGTCACGGGTGCTGTGGATTTGCTTGTTCTTAAGAATGGAGTTGAACAGGCAAGTCTGTTCATTGAAGCTCTTGGATTTTTTGAATGTTGGGTTTTTGAATTACCCATGTGGCCGTCCAAGGTAATTGATTTACTGACTATACTGTTCCAATGTTTGCAGGTTGTTGGAGAGGCTAAAACTGGTGAACTTTGCGGAGAGATTGGGGTGTTATGTTACAGGCCACAACTGTTTACTGTGCGTACAAAACGATTGAGTCAGTTGCTGCGTCTGAATCGAACGGCTTTCCTGAATATTGTTCAATCTAATGTTGGTGATGGGACTATAATCATGAACAATCTTCTTCAGCACTTGAAAGACGTCAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGATTGGACCTACCACTTAGTCTTTGCTTTGCAACACTTAGAGGTGACGACTTGCTTTTACACCAACTTTTGAAAAGAGGTCTCGATCCAAATGAATCAGATAACAATGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAACGAGAACTGTGTGCTTTTATTGCTGGACTTTGGCGCGGATCCCAACAGTAGAGATTCAGACGGGATTGTGCCATTATGGGAGGCGATACTAGGTGGCCACGAGGCAGTAGTGCAGCTACTTATAGACAATGGTGCTAATCTCCGATCAGGAGATGTGGGTCACTTCGCGTGTACTGCCGCAGAGCAAAACAACCTCCAGTTGCTCAAAGAGATTCTCCGATATGGCGGAGACGTTTTGAGTTCCAGGAACAATGGAACGACTGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTCAAGTTCCTTCTTAAACAAGGAGCTGATGTTGACAAACCGGATGTCCATGGATGGACTCCAAGAGATCTAGCGGACCAACAGGGACATGAAGAAATTAAAAACCTCTTCCAGACAATAAAAGAATCGAAAACTCAATCTGTCGTTGCCATTCCCGAGAAGCAGAAAGCGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCTTCCTTCGCCTCAGGAAGGAAATGATGGTTCATGGGCGGGTCAATCTCGTCCACGACGTAGGACTAACAACTTCCATAACTCATTGTTTGGAATCATGTCAGCAGCACATACAGGCGAGAAAGACATGAGTTTTGCTGATCACCAAACCAGAGGAGAGAAATCTGGAACCAACCCGGCAAGGGTGATAATCAGCTGTCCAGAGATTGGCGAAGTAGCTGGGAAGGTAGTGCTGCTTCCAGAAAGCTTCAACGAGCTGCTTGAGATTGGTTCCATGAAATATGGGATTATGGCTTCAAAGGTATTGAACAAAGATGGGGCTGCCATTGAAGATATAGAGGTCATTAGGGACGGCGATCAGCTTATTTTTGTCAGCAATGGAGGAACCATATAA | 2733 | 43.4 | MDAVRNRGPFRVSVCGQEELEQLSRDGSQFSLSTGILPSLGARSNRRVKLRRFVISPYDHRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSITDNVVNGFFAVDIVLTFFVAYLDKSTYLLVDEPKKIALKYASSWLVFDVISTIPSELAHKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYHDPKRTWIGASMEDFLEQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLIFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQASLFIEALGFFECWVFELPMWPSKVIDLLTILFQCLQVVGEAKTGELCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDVKDKDPIMEGVLLETENMLARGRLDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASKGNENCVLLLLDFGADPNSRDSDGIVPLWEAILGGHEAVVQLLIDNGANLRSGDVGHFACTAAEQNNLQLLKEILRYGGDVLSSRNNGTTALHVAVCEDNIEIVKFLLKQGADVDKPDVHGWTPRDLADQQGHEEIKNLFQTIKESKTQSVVAIPEKQKAIRFLGRFTSEPMILPSPQEGNDGSWAGQSRPRRRTNNFHNSLFGIMSAAHTGEKDMSFADHQTRGEKSGTNPARVIISCPEIGEVAGKVVLLPESFNELLEIGSMKYGIMASKVLNKDGAAIEDIEVIRDGDQLIFVSNGGTI | 910 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2688737 | 2694193 | + | Carg09888-RA | Car10g00536 | 155438 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car10g00536 | 910 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 519 | IPR000595 | - | |
| Car10g00536 | 910 | MobiDBLite | consensus disorder prediction | 779 | 800 | - | - | |
| Car10g00536 | 910 | Pfam | KHA, dimerisation domain of potassium ion channel | 841 | 903 | IPR021789 | - | |
| Car10g00536 | 910 | ProSiteProfiles | Ankyrin repeat region circular profile. | 597 | 628 | - | - | |
| Car10g00536 | 910 | ProSiteProfiles | Ankyrin repeat region circular profile. | 630 | 661 | - | - | |
| Car10g00536 | 910 | ProSiteProfiles | Ankyrin repeat profile. | 630 | 662 | IPR002110 | GO:0005515 | |
| Car10g00536 | 910 | ProSiteProfiles | KHA domain profile. | 841 | 910 | IPR021789 | - | |
| Car10g00536 | 910 | ProSiteProfiles | Ankyrin repeat profile. | 597 | 629 | IPR002110 | GO:0005515 | |
| Car10g00536 | 910 | Pfam | Ion transport protein | 63 | 307 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Car10g00536 | 910 | ProSiteProfiles | Ankyrin repeat profile. | 694 | 726 | IPR002110 | GO:0005515 | |
| Car10g00536 | 910 | ProSiteProfiles | Ankyrin repeat region circular profile. | 694 | 725 | - | - | |
| Car10g00536 | 910 | Pfam | Ankyrin repeats (3 copies) | 569 | 658 | IPR002110 | GO:0005515 | |
| Car10g00536 | 910 | Pfam | Ankyrin repeats (3 copies) | 669 | 724 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car09g00415 | Car-Chr9:2299197 | Car10g00536 | Car-Chr10:2688737 | 0 | dispersed | |
| Car10g00536 | Car-Chr10:2688737 | Car13g00439 | Car-Chr13:6831686 | 1.34E-07 | dispersed | |
| Car14g00509 | Car-Chr14:2799335 | Car10g00536 | Car-Chr10:2688737 | 2.12E-14 | transposed | |
| Car10g00536 | Car-Chr10:2688737 | Car11g00432 | Car-Chr11:2414856 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car10g00536 | K21867 | - | csv:101220784 | 1607.04 |