Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00545 ATGGCTCAAGTTTTTTACTTGCCCCCCCGTCTCCCATTTTTCCTAATTTCCCTTCTTTTTCTTCTTTGTTCTGTTCAATCTGAGCCCTCCGCTGACAAGGAAGCTCTTCTTGATTTCTTCAATAAAGTACCCCATGGCCCTCGTCTTCAATGGAATGCTTCCGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGCTACTCAGTCCTTTGTTTTTGCTCTCCGGTTACCGGCTGTTGGGCTTCTTGGTCCGATTCCGGCTGGCACTCTCGGTCGGTTGAATCGTCTTCGAGTTCTTAGTCTCCGGTCGAATGGGATCTCTGGGGGTTTGCCGACGGATTTTGCTAATTTGACGTTTCTTCGAAGTCTTTTTCTCCAAGACAACGAGCTTTCCGGCGATTTTCCAGTGAGTGTGACTCAGTTGACTCGGTTGACTCGTCTCGACCTCTCGTCGAACAATTTCTCTGGTTCGATTCCGTTTTCGGTGAATAATCTGACCCTGCTGACTGGGCTTTTCTTGGAGAATAATGGGTTTTCGGGTTCTCTGCCGAGTATTCCGGCGATTAGTTTAACGCACTTCAATGTATCGAATAATAAGCTCAATGGATCCATTCCCGAAACGCTAGCGAAATTTTCTGCTTCATCTTTTGCTGGGAATTTAGCTCTCTGCGGTGGTCCATTGCCGTCGTGCAACCCGTTTTTTCCATCCCCTGCTCCGTCGCCGACGTCCGCCTTGAAACCCCCACAATTTCCCGTCGAGAAGAAATCGAGAAAGCTCTCAATCGCCGCCATTGTCGGAATTGTCGTTGGCGCTGCTTTTGTCGCTTTTCTATTGCTGTTTCTTCTCCTATTTTGCCTTCGAAAGCGCGAGCGGAGGCAACCAGCGAAGCCACCGACTACAGTGGTTGCTGCTCGATCTGTACCGGCGGAGGCCGGGACATCGTCTTCGAAAGACGACATCACCGGCGGATCAGTGGAGACAGAGAAAAACAAATTAGTGTTCTTCGAGGGTGGGATTTACAGCTTCGACTTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTAGGAAAAGGAAGTGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGGACCACCGTGGTGGTGAAGAGATTGAAAGATGTGGTGGTAACGAAGAAGGAGTTCGAGACGCAAATGGAGGCTGTGGGAATCATTAACCATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTCTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCCTCCTCCCTTCACGGAAGCAGGGGATCCGGCCGTACGCCGCTTGACTGGGACAACCGGATGAAAATCGCATTAAGCGCGGCAAGAGGATTGGCTCACCTCCACGTGTCAGGAAAACTCATCCACGGCAACATTAAATCGTCGAACATTCTCCTCCGTCCCAACCACGATGCCGCCGTTTCAGACTTCGGCCTTAACCCTCTCTTTGGCACCTTAACGCCACCCAATCGGATTGCTGGTTACCGCGCGCCGGAGGTTGTCGAAACCCGTAAGGTCACGTTCAAGTCCGACGTGTACAGTTTTGGCGTTTTGCTGTTGGAACTTCTCACCGGGAAATCGCCAAATCAATCGTCGTTGGGCGAAGAAGGGATTGATCTTCCGCGGTGGGTCCAGTCGGTGGTTCGAGAGGAATGGACGGCGGAAGTTTTTGATGTGGAATTGATGAGACACCACAATATCGAAGAAGAGATGGTTCAGCTTTTACAAATTGCCATGTCCTGCGTCGCCGCCATGCCGGACCAGCGCCCGTCGATGCAGGAAGTGGTTCGTATGATTGAGGATCTAAACCGCGTTGAGACCGACGATGGCTTACGCCAGTCATCCGATGACCCATCTAAAGGGTCGGAGGGCCACACGCCGCCGTCGGAGTCCAGAACCACCCCTCCCGGAGCCGGTGTACCACCGTAG 1977 51.85 MAQVFYLPPRLPFFLISLLFLLCSVQSEPSADKEALLDFFNKVPHGPRLQWNASASACTWVGVVCDATQSFVFALRLPAVGLLGPIPAGTLGRLNRLRVLSLRSNGISGGLPTDFANLTFLRSLFLQDNELSGDFPVSVTQLTRLTRLDLSSNNFSGSIPFSVNNLTLLTGLFLENNGFSGSLPSIPAISLTHFNVSNNKLNGSIPETLAKFSASSFAGNLALCGGPLPSCNPFFPSPAPSPTSALKPPQFPVEKKSRKLSIAAIVGIVVGAAFVAFLLLFLLLFCLRKRERRQPAKPPTTVVAARSVPAEAGTSSSKDDITGGSVETEKNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEAVGIINHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHVSGKLIHGNIKSSNILLRPNHDAAVSDFGLNPLFGTLTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQSSLGEEGIDLPRWVQSVVREEWTAEVFDVELMRHHNIEEEMVQLLQIAMSCVAAMPDQRPSMQEVVRMIEDLNRVETDDGLRQSSDDPSKGSEGHTPPSESRTTPPGAGVPP 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2736874 2739622 - Carg09879-RA Car10g00545 155447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00545 658 MobiDBLite consensus disorder prediction 618 658 - -
Car10g00545 658 ProSiteProfiles Protein kinase domain profile. 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00545 658 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Car10g00545 658 MobiDBLite consensus disorder prediction 618 635 - -
Car10g00545 658 Pfam Protein kinase domain 353 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00545 658 MobiDBLite consensus disorder prediction 296 324 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00545 Car12g01202 CCT
Car05g01237 Car10g00545 CCT
Car10g00545 Car11g00462 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00545 Car-Chr10:2736874 Car20g00263 Car-Chr20:1527659 0 dispersed
Car10g00545 Car-Chr10:2736874 Car11g00462 Car-Chr11:2548674 0 wgd
Car10g00545 Car-Chr10:2736874 Car12g01202 Car-Chr12:11466762 0 wgd
Car10g00545 Car-Chr10:2736874 Car05g01237 Car-Chr5:11570461 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89136 PF00069 Pkinase 1.60E-35 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00545 - - cmo:103501524 1059.28