Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00558 ATGAATCCCAACTCCCATTTCAACATCTCACCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTTCCCGCATTCCTCCGCCTCCCCGCCGCCCTCCCCGCCGTCAGCCATGGCAGCCTCTCTGACGCTGAAGCTCTCTACATCCGCCACCGCCAGCTTCTGTACTACAGAGACGAGTTTGGTGACCGTGGCGAAGAAGTCACTGTGGACCCATCTCTGGTTTTCGAAAACGGGAGGATTAGAAATGCTTACATTGCACTTCAGGCTTGGAAACTAGCCATTTTGTCTGACCCTTTCAATCAAACCGCCAGTTGGGTCGGATCTGACGTCTGCAGCTACTTCGGCGTTTACTGTGCTCCCGCATTGGACGACCCCAACATCCGTACCGTCGCTGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTGTGGATCTTGCATTGTTCCATATCAATTCAAACAGATTCTGCGGCACTTTACCCCACAGATTTGATCGTCTCAAGTTGCTACACGAATTGGATCTCAGTAATAACCGGCTCGCTGGGAAGTTCCCCGGCGTGGTTCTCAAGCTTCCGGCGCTCAAGTTTTTGGATCTGAGGTTTAACGAATTCGAAGGAAATGTACCCAGAGAGCTGTTCGATAAGGATTTAGACGCCATTTTTATTAACCACAACAGATTCAGATTCGAACTGCCTGATAATTTTGGAAATTCGCCTGTGTCGGTCATTGTTCTTGGGAACAATAAGTTCCATGGGTGTGTGCCTTCGAGCTTGGGCAACATGACGAGGCTGAATGAGATCATTATGATGAACAATGGGCTTAATTCTTGCTTGCCGCCCGAAATTGGGGCGTTGAAGAACTTGACGGTGTTCGATGTAAGTTCCAATGAGCTGGTGGGTCCGTTGCCGGAGACATTTGGAGGGCTTGCGAGTTTGGAGCAACTCAATGTGGCGAATAATTTTCTTTCTGGGACGATTCCGGAGAGTATTTGTGATTTGCCGAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCGCAGACGTGTTTGAGGGTTCCGGATTTCAGTGATCGGAGGAATTGCTTGATTGGGCGGCCGGCGCAGCGGCCGAGTGGGCAATGTAAGGCGTTCTTTTCGCGGCGTGTTGATTGTAATGCGTTTAAATGCGGTGCTTCTTCTGTTTCGCCTTCTACTCCATTTACTCCGCCGGTTGTTTCGCCCTCTTCACCTCCGTCACCGGCAGGGGAGGTGTCTCCTCCATCGCCGCCGCTCTCGCCCCATTTTCCTTCTCTGTCGCCACATTCGCCACCGTCGGCACCGCCATTGGTTTCTTCTCCGCCGTCACCTTCCTCTCCGTCTACACCTACAACCCCTTCAACGCCGCCTCAAGGTCATGCTCCGCCGTCATTACCCTCACCCTTATCGCCCCCTAAAGGTCTTTTTCCGCCGACTGATCCCTTACCATCCTCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGCCTTCCTCTCCATCTACACCTACAACCCCTTCAACGCCGCCTCAAGATCATGCGCCGCCGTCATTACCCTCACCCTTCTCGCCCCCAAAAGGTCATCCACCGCCGGCATTACCTCCGCCGTCTGAACCCTTACCATCTTCACCACCCCACGGCCATACTCCCCCGGGACCACCTTCGCCTTCCTCTCCGTCTACACCCACAACCCCTTCAACGCCGCCTCAAGGTCATGCTCCACCGTCATTACCCTCACCCTTATCTCCCCCAAAAGGTCATCCGCCGCCAGCATTACCTCCGCCGTCTGAGCCCTTACCATCCTCACCACCCCACGGCCATACTCATCCGGGTCCACCTTCTTCATCCGAACCGCCATCATCGCCGCCACAAGATCACTCTCCGCCAACTCCCTCGCCGTCCGAACCGTCACCTTCAACGCCGCCTACAGGTCACACTCCAGCCATTCCTCCTTCACCATCCGGACCTGCACCTCCATCACCGCCACAAGTCCACAATCCGCCGGTCAAGCCTTCTCCTCCAGTAGCATCATCACCACCAGCACCATCACTCCCAGTTCACACTCCGCCTCCGCCATATTTCCCTGATTTCCCTTCGCCACCATCCACACAACCTCCTGTCTACTGTCCCCGCTCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCCAACACCCCACCTCCCCTCCGCCGCCATTACCTGTTCATTATCCCCCTTCCCCTGTTTATACATCGCCATCGCCGCTTCCTCTTCCTTGCATACAACCTCCTCCACCTCCCCCACCAGATACTCAATACTCAGAACCACCGCCAACACCATCGTCTCCGATTCCCTACAATTCCCCACCACCGCCGTCTCCATCGCCCCCACCGCCTCCAAGCCCTGTATACGGAGGTCCCCTGCCACCAATCTACGGAGTTCCATACGCGTCTCCTCCGCCACCACCCTTATATTAA 2523 55.25 MNPNSHFNISPLLLLLLLLLFLPAFLRLPAALPAVSHGSLSDAEALYIRHRQLLYYRDEFGDRGEEVTVDPSLVFENGRIRNAYIALQAWKLAILSDPFNQTASWVGSDVCSYFGVYCAPALDDPNIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTLPHRFDRLKLLHELDLSNNRLAGKFPGVVLKLPALKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLGNNKFHGCVPSSLGNMTRLNEIIMMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPETFGGLASLEQLNVANNFLSGTIPESICDLPKLQNFTFSNNFFSGEPQTCLRVPDFSDRRNCLIGRPAQRPSGQCKAFFSRRVDCNAFKCGASSVSPSTPFTPPVVSPSSPPSPAGEVSPPSPPLSPHFPSLSPHSPPSAPPLVSSPPSPSSPSTPTTPSTPPQGHAPPSLPSPLSPPKGLFPPTDPLPSSPPHGHTPPGPPSPSSPSTPTTPSTPPQDHAPPSLPSPFSPPKGHPPPALPPPSEPLPSSPPHGHTPPGPPSPSSPSTPTTPSTPPQGHAPPSLPSPLSPPKGHPPPALPPPSEPLPSSPPHGHTHPGPPSSSEPPSSPPQDHSPPTPSPSEPSPSTPPTGHTPAIPPSPSGPAPPSPPQVHNPPVKPSPPVASSPPAPSLPVHTPPPPYFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLQHPTSPPPPLPVHYPPSPVYTSPSPLPLPCIQPPPPPPPDTQYSEPPPTPSSPIPYNSPPPPSPSPPPPPSPVYGGPLPPIYGVPYASPPPPPLY 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2821826 2824348 - Carg09866-RA Car10g00558 155460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00558 840 MobiDBLite consensus disorder prediction 412 827 - -
Car10g00558 840 MobiDBLite consensus disorder prediction 404 827 - -
Car10g00558 840 Pfam Leucine rich repeat 295 352 IPR001611 GO:0005515
Car10g00558 840 Pfam Leucine rich repeat N-terminal domain 86 118 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01248 Car10g00558 CCT
Car10g00558 Car12g01214 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00558 Car-Chr10:2821826 Car09g00168 Car-Chr9:835696 5.90E-145 dispersed
Car19g00446 Car-Chr19:6192217 Car10g00558 Car-Chr10:2821826 1.67E-78 dispersed
Car10g00558 Car-Chr10:2821826 Car11g00470 Car-Chr11:2579101 0 wgd
Car10g00558 Car-Chr10:2821826 Car12g01214 Car-Chr12:11564190 0 wgd
Car10g00558 Car-Chr10:2821826 Car05g01248 Car-Chr5:11663486 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00558 - - cpep:111779752 838.95