Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00560 ATGGAGGAGAATCACTGCAATGGAAATTCTCAATCCCTGCTCAATTTACCCAAAATCAAGTTCACAAAGCTTTTCATCAATGGACAATTCCTTGACTCTGTTTCAGGAAAAACTTTGGAGACCATAGATCCAAGAACAGGGGAGGTTATCGCGTCGGTGGCCGCCGGGGACAAAGAAGACGTGGATTTGGCCGTGAAAGCCGCCCGTGAGGCCTTCGATCATGGCCCTTGGCCACGCATGTCCGGCGCCGAGAGGGGGAGGATAATGACGAAACTAGCGGAATTGATAGATGCACACGTGGAGGAACTGGCAGCGTTGGATACCATCGACGCTGGAAAATCGTTTCATCTGGGGAAGATAGTGGATATACCCGGGGCTGCAAATACGCTGCGGTACTACGCAGGTGCAGCGGATAAAATTCACGGCAAGATATTGAAAATGTCAAGGCCGCTTCATGGCTACACGTTACTGGAGCCGATTGGAGTGGTGGGCCATATCATACCGTGGAACTTTCCGACGACCATGTTCTGGTTGAAAGTCAGCCCAGCGTTGGCTGCCGGATGTACCATGATCGTCAAGCCCGCCGAACAGACGCCCCTCTCCGCCCTGTTCTACGCTCATCTCGCCAAACTGGCTGGCATTCCAGATGGAGTACTCAACGTTGCCGCAAGTGCCAGTAACCTGAAGCAAGTGTCACTGGAATTAGGAGGGAAATCCCCTCTTCTAATCTTCGATGATGCTGATATCAACAAAGCCGTCGATCTTGCTCTCCTCGCCATTTTTTACAACAAGGGAGAAATCTGCGTGGCCGGCTCCCGGGTTCTGGTTCAAGAAGGAATTTATGATGAATTCGTCAAAAAGATTAGCGAAAAGGCCAAATCCTGGGTGGTGGGAGACCCTTTTGATCCCAAAGTTAATTATGGACCCCAGGTGGACAAAAAGCAACTGGATAAGATTCTGATGTACATAGAACACGGTAAAAGAGAAGGAGCAACGCTGGTTACAGGCGGGAAGCGTATAGGCGAAGTGGGGTATTACGTAGAGCCCACAATCTTCACAGACGTCAAGGAAGACTCGCTGATTGCGCAGGATGAAATATTCGGGCCAGTTCTGTCCGTCATAAAATTCAAGACGATTGAAGAGGGAATAAGGAGCGCAAACAACACCAAGTACGGGCTGGCAGCTGGGATAGTAACGAACAACATAGACATAGCCAACACGGTGTCCAGGTCCATCCGAGCGGGTACCATCTGGCTAAATTGTTACTTTGCTTTCGACTCGAGCTGCCCGTTCGGAGGGTATAAGGCGAGTGGGTTCGGGAGAGACTCTGGAATGCAGGCTATCCATAAGTATCTTCAAACCAAAGCCGTCCGTTGCGACTCCTTTGGTTAA 1392 50.29 MEENHCNGNSQSLLNLPKIKFTKLFINGQFLDSVSGKTLETIDPRTGEVIASVAAGDKEDVDLAVKAAREAFDHGPWPRMSGAERGRIMTKLAELIDAHVEELAALDTIDAGKSFHLGKIVDIPGAANTLRYYAGAADKIHGKILKMSRPLHGYTLLEPIGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVAASASNLKQVSLELGGKSPLLIFDDADINKAVDLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKISEKAKSWVVGDPFDPKVNYGPQVDKKQLDKILMYIEHGKREGATLVTGGKRIGEVGYYVEPTIFTDVKEDSLIAQDEIFGPVLSVIKFKTIEEGIRSANNTKYGLAAGIVTNNIDIANTVSRSIRAGTIWLNCYFAFDSSCPFGGYKASGFGRDSGMQAIHKYLQTKAVRCDSFG 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2833711 2838232 - Carg09864-RA Car10g00560 155462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00560 463 Pfam Aldehyde dehydrogenase family 223 457 IPR015590 GO:0016491
Car10g00560 463 Pfam Aldehyde dehydrogenase family 33 221 IPR015590 GO:0016491
Car10g00560 463 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 261 272 IPR016160 GO:0016491
Car10g00560 463 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 233 240 IPR029510 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00560 Car-Chr10:2833711 Car12g00001 Car-Chr12:9331 2.23E-176 dispersed
Car10g00560 Car-Chr10:2833711 Car11g00477 Car-Chr11:2612702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00560 K12355 - pop:7458755 708.753