Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00582 ATGGCCACTGCTGAAACAAAATTAATCAACAGGTATTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCTATAACAATGTGGAGAATGAAGCTTTCAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACGAGAGATCAGGGATGAGGTTGGAGAGGTGGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATCCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAAGCTCTTTTCCATGGTGACCATGTCAGCAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCGTCTGGTTATGCTTACCTTCCCACTTCAAAGAAAAGAAAAGTCCCAGAGCTATGCTTTGCCTCTGTAGGGAAGGATCCCCCCCTCAACAGCATTCCACAATTTCATCAGGTGAATAATTTAATGTCTTCAGGCACGTCTACATCATCTCCCCTCCCAGTTGCTCATGCTGGCAGCCCTGCAGCACCGGGGACTTCAAAGTTTTCATTCAGGTCCTTATTAGCTGACCTCGTCCAGCCACACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTGTCAAGTGAAGTTGCCAAGAACATAGCAGAAAAAAGAATTGCTGAGGAGCAGATAAATGATCCACTACAAATTTCCCGTGCTTCATCAGCTGGAGATGGGTCACAGCATCAGAAGGCAGATGAGAAAGCTGCCGATGGTGGGTGTGGAAGTTTAAACCAAAGTGAGAGGCCTGTACATGATAATCACTCAGATAGTTCAGATATGACAAAATCAAGGCCAATGTCCCCAGGAACCTTAGCTTTAATGTGTGACGAACGAGATACAATGTTCATGGGAGCTGCTACAGCTGATCGTTTGGCAGGGCATGGTTGCAACACATCATCGCATGTGCCTGATAAGTCTGTGTCAGAAGTCTACATAGAGCAGGAACGGATCGTGTTGACGAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAGATTAAGGAAACAAACTTCACGTCTAGAAGCGAAGAGAGGAGCGAAAATCAAAGCAACAATTTCACAACAAATAGCGGATGCAAACAGGGAACTATCGACAATGGGGTCATAAAAAATGTCGCTCTCTCGGCACCCATAGTACCGCAAGTCGGTACCTCAGCTGGTCGTCCTAGTAATGATCTGCTACCCAGAATTCTACCCCTTCCTGAAAATGGGAAGAGTAAACCAGAAGTTGACAGAGAAGTGTAG 1413 44.66 MATAETKLINRYCECFASGIYCDGCNCTNCYNNVENEAFRREAVETTLERNPNAFRPKIASSPHGTREIRDEVGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVSNMAYIQQAANAAITGAIGSSGYAYLPTSKKRKVPELCFASVGKDPPLNSIPQFHQVNNLMSSGTSTSSPLPVAHAGSPAAPGTSKFSFRSLLADLVQPHDLKELCSVLVVLSSEVAKNIAEKRIAEEQINDPLQISRASSAGDGSQHQKADEKAADGGCGSLNQSERPVHDNHSDSSDMTKSRPMSPGTLALMCDERDTMFMGAATADRLAGHGCNTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETNFTSRSEERSENQSNNFTTNSGCKQGTIDNGVIKNVALSAPIVPQVGTSAGRPSNDLLPRILPLPENGKSKPEVDREV 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2937435 2943360 - Carg09842-RA Car10g00582 155484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00582 470 MobiDBLite consensus disorder prediction 272 324 - -
Car10g00582 470 MobiDBLite consensus disorder prediction 394 416 - -
Car10g00582 470 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 9 33 IPR005172 -
Car10g00582 470 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 84 118 IPR005172 -
Car10g00582 470 ProSiteProfiles CRC domain profile. 1 121 IPR005172 -
Car10g00582 470 MobiDBLite consensus disorder prediction 195 214 - -
Car10g00582 470 MobiDBLite consensus disorder prediction 437 470 - -
Car10g00582 470 MobiDBLite consensus disorder prediction 399 416 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01259 Car10g00582 CCT
Car10g00582 Car12g01226 CCT
Car05g01259 Car10g00582 ECH
Car10g00582 Car12g01226 ECH
Car10g00582 Car11g00499 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00582 Car-Chr10:2937435 Car17g00197 Car-Chr17:1181670 7.77E-08 dispersed
Car10g00582 Car-Chr10:2937435 Car11g00499 Car-Chr11:2700853 0 wgd
Car10g00582 Car-Chr10:2937435 Car12g01226 Car-Chr12:11661240 5.89E-158 wgd
Car10g00582 Car-Chr10:2937435 Car05g01259 Car-Chr5:11732054 1.81E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4182 PF03638 TCR 2.40E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00582 - - csv:101222405 744.577