Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00596 ATGCCCCTGCTTATTGAGAATGACTCTACAACTTTCAGCTTCTCCTCGCCGTCGCCGTCGCCATCGCCGTCGCCGTCTTCGTCGGGGAGTTTATCCATGGTTCTATTAGGGGAGAGTGATCAGTCAGGGACGGCGGTAGACTCCAATCGGAAACGAGCCAAACGGCCGAGAGAAAACAGCAACAGCAAACACCCACTCTTCCGTGGGGTCCGAATGAGGGCATGGGGGAAATGGGTGTCCGAAATTCGTGAGCCTCGAAAGAAGAGTCGGATCTGGCTTGGCACTTTCTCTACCCCTGAAATGGCCGCACGTGCCCACGACGTTGCCGCTCTCACCATTAAAGGAAACTCCGCCATTCTCAACTTCCCTGAACTCGCCGATCAATTCCCCCGCCCCGCTTCCAACTCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCAACTCCCCCACCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTATGTCCATCGACGCCGGAGGAACTGAGTGAAATAGTGCAACTCCCGAGTTTAGGAACGAGTTACGAAACGGCCGAGTTAGGAAACGAATTCGTATTCGTCGACTCAGTGGAAGGTTGGCTGTATTCATACCCATGGTATCAAAGAGTGAATAACAATGCAGATGAAGAACAGAGCCATGGCTTCTTCAGAGACCAGATTTCAACAGACTCCATAACTCCTCCATCTTCAACCTTCGAAGCTTTCTTATGGCAATATTAA 765 53.33 MPLLIENDSTTFSFSSPSPSPSPSPSSSGSLSMVLLGESDQSGTAVDSNRKRAKRPRENSNSKHPLFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTPPPSSSSSSSSSSSLCPSTPEELSEIVQLPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYQRVNNNADEEQSHGFFRDQISTDSITPPSSTFEAFLWQY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3011050 3011814 + Carg09828-RA Car10g00596 155498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00596 254 MobiDBLite consensus disorder prediction 1 67 - -
Car10g00596 254 MobiDBLite consensus disorder prediction 153 172 - -
Car10g00596 254 MobiDBLite consensus disorder prediction 130 172 - -
Car10g00596 254 MobiDBLite consensus disorder prediction 25 44 - -
Car10g00596 254 MobiDBLite consensus disorder prediction 45 64 - -
Car10g00596 254 MobiDBLite consensus disorder prediction 1 17 - -
Car10g00596 254 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Car10g00596 254 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00538 Car-Chr5:3137565 Car10g00596 Car-Chr10:3011050 2.06E-60 dispersed
Car09g00205 Car-Chr9:1025550 Car10g00596 Car-Chr10:3011050 1.22E-24 dispersed
Car09g00561 Car-Chr9:3186595 Car10g00596 Car-Chr10:3011050 6.06E-61 dispersed
Car10g00596 Car-Chr10:3011050 Car12g00237 Car-Chr12:1595860 2.38E-65 dispersed
Car10g00596 Car-Chr10:3011050 Car11g00522 Car-Chr11:2808630 1.54E-73 wgd
Car10g00596 Car-Chr10:3011050 Car12g01235 Car-Chr12:11712853 2.90E-64 wgd
Car10g00596 Car-Chr10:3011050 Car14g01146 Car-Chr14:10096742 4.67E-45 wgd
Car10g00596 Car-Chr10:3011050 Car05g01271 Car-Chr5:11800091 6.03E-70 wgd
Car10g00596 Car-Chr10:3011050 Car08g00611 Car-Chr8:3940907 7.41E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4185 PF00847 AP2 5.10E-13 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00596 K09286 - csv:101219745 303.908