Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00622 ATGATTATCGGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCTTTGACGATACCGGAGGAGCCTGCAAGCGAGACGCGGTTTCCTTATCCTCTGAGCGGAATCTCGGTGAGTTCCGATGGAAATGGCAATGGTGGCGATTACTCTTCCTATTATCTGAAGGAAGCTCTAGCGGCTCTCCAGCGATATACGAACGAGTCGGAGATTGAATCGGATTCGGAATTATCCGGGCGGGAATCGGACGTTCCGGTGGATGCGTACTCGTGCGATAATTTCCGGATTTTTGAGTTTAAGGTGAGGAAGTGCACGCGAGGACGGTCTCATGATTGGACGGAGTGTCCGTTCGCACATCCAGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCCGACTTTCGTAAAGGTAGCTGTAAAAAAGGGGATTCGTGTGAGTTTGCTCATGGTGTATTCGAGTGTTGGCTCCATCCTGCTCGTTACAGGACTCAGCCGTGCAAGGACGGGACGAACTGTCGACGGAGGGTCTGTTTCTTCGCCCACACTCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGTACTCCCCAGAGCCGTACGATGAATCTCCTGTACGGCAGTGTTTGGATGGATCCTGTGCCAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTATCACCGTCGGCGACTCCAGTAGACTCCCCACCGTTATCTCCCATGACTCGATCGCTCGGCCGATCTCTTGGCTCGAGCTCCATTAATGAAATGGTCGCATCTCTCCGTAACTTGCATCTGAGCAAGGTCAAGTCACTGCCATCTTCCTGGAATGTTCAGATTGGATCCCCTGGTTATCCGTCTCGAATCTGCCATGGATTCTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGCTCCTGGAGTTGGGCTGCTCGACTTCTCGGACCACGGATTGCAGGAGGAACCAGCTATGGAGCGAGTGGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGTGGATTCAAGCTCTTCAGCTTGCACACCAGACGTTGGATGGGTATCAGAGCTACTGAAGATTTGA 1149 53.52 MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPSATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELLKI 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3158837 3161243 - Carg13023-RA Car10g00622 155524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00622 382 MobiDBLite consensus disorder prediction 235 256 - -
Car10g00622 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 158 IPR000571 GO:0046872
Car10g00622 382 ProSiteProfiles Zinc finger C3H1-type profile. 134 160 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00097 Car-Chr5:498875 Car10g00622 Car-Chr10:3158837 1.28E-77 dispersed
Car10g00622 Car-Chr10:3158837 Car19g00787 Car-Chr19:8548602 1.73E-66 dispersed
Car01g01366 Car-Chr1:12022257 Car10g00622 Car-Chr10:3158837 2.79E-103 wgd
Car10g00622 Car-Chr10:3158837 Car11g00553 Car-Chr11:2977852 0 wgd
Car10g00622 Car-Chr10:3158837 Car12g01256 Car-Chr12:11829776 1.16E-156 wgd
Car10g00622 Car-Chr10:3158837 Car12g00569 Car-Chr12:3813502 1.12E-82 wgd
Car10g00622 Car-Chr10:3158837 Car09g00274 Car-Chr9:1495919 2.56E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4187 PF00642 zf-CCCH 1.70E-06 CL0537 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00622 - - csv:101204432 672.93