Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00675 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTACGGATTTTAGATGGTGAAGAAGGAGTTGATGCAAGGAATGATCTCACTAATGGCTCTGTTGCTTCTGTTCCTGATTTTGAGCCAAAAGAAACTCGGAGTGTTAGGTGCGCAATCCCGCAATCCGTGGTTGAGAGCTCTCCTTCACACGAGATTTCCAGAATGAGTTCACTGAAACCTCCAAAAATTCCTGTCGGATCGGCAGTTCGGCGCCCATCATTTGCTCGATCTTCGTTTTCAAAACCGAAATCAAGGCTAATAGAGCCGCCTTGTCCTGATGGTGCAAGTTTGGCGGAAGAAAATGCTCAAGCAAAATCAACATCTGGTTCACCATTCTCTAGCTCTCCGAAGATGGACTCACCAGCTAATATAGCCACTGCGACTAGTCCTAAAGAATCTTTGAAGTCTGCTCCGATAACTCCTAGAACACCATTGGTTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTCTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCAAGGAAGAAATTGAAAAGAGCAGTTTTAATTGAATGGATTGCATTTTTGTGCATAACAGCATGTTTAATTTCCAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAATGGTGTGTTTTGGTATTAGTCATTTTCTGTGGCCGTTTATTTTCACAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAGAGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTTTTTATTTGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTGTTTGATCAAAGCATCAAAAGATCTAAGAAAGTCAATGAGATTCTGAATTATGTTACACGAGCTCTTGCTGCTTCGCTAATTGGAGCAGGATTATGGCTGGTGAAAACTTTGTTGGTGAAGATACTAGCTGCATCTTTTCAATGCACTCGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTGCGCACTCTATCAGGACCTCCACTGATGGAGATGGCCGAGAGGGTTGGGGGAGCGGCAAGCTCAGGGCAATTGAGCTTCAGGCATTTGAAGAAAGAAAGAGATGGTGGGAATGAGGGGAAGGAAGAAGTGATTGATGTGGATAAACTCAAAAAGATGAAGCAAGAAAAAGTGTCTGCTTGGACCATGAGAGGGCTGATCAATGTTATTAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGGTGAGCAAAAAGACAAGGAGATTAACAGTGAATGGGAAGCAAGTGCTGCAGCTTACCAGATTTTCAGGAACGTTGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAACAAGGAAGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGGGTTGAGACTGGGAAGATAAAGCGAAAAACCCTTAAGAATTGGCTGGTGAACGTTTATATCGAACGGAAGTCACTAGCGCACTCATTGAACGACACCAAAACTGCCATAGAGGAGCTAAACAGGCTTGCTTCTGCATTTGTACTGATTGTTATTATCATTGTATGGCTACTTCTGATGGGTTTCTTGACCACACAAGTACTCGTCTTCATTTCATCACAGCTTCTACTGGTGGTTTTCATGTTTGGTAACACTGCCAAAACTATATTCGAAGCAATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGGTGTGTTGTAGATGGTGTTCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGTGATTCGATCGACTTTTCGGTTGACTTTTCCACATCAATTGAAAGCATTGGAGCCCTAAAAGCAAGAATAAAATCATATCTTGAAAGCAAGCCTCAGTTCTGGCGGCCGAACCACAGCGTGATCGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTGAGTCTATACATCAATCACACCATAAACTTTCAGAACTATGGTGACCGGAGCAGTCGCAGATCGGATCTAGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTGGGCATCAAGTATCATCTGCTACCTCAAGAAGTCCAGCTCAACTATCTCCCATGGTTTCGACAACCTCGCGGAGATGAAGAAGTTGCCACGTCGGATAGAGATGAAGATTTCGAGCTCTCCCAAAATCTCCCCAATTTCCGCCTCTCCACCGCTTTTCTACTTCCTTGGCCCACTTCCGAAACCAAAATCCCCAATTCCGGAAATTCGCAGAGCTTTCGAATCATATCAATGGCTTCCACTTCTGCAGTTTCACTGGCCCTGCCATTGACTAACGCCACCCACAAGAGACTGTCCAACCACGCCTTCTTCAATCCATTGCCTGCTTCTTCTTCTTCGAGGTCTCGCAAGGCCATCGCCGCCGCGCCGACATCTAACGGGAGCCTCGTCGCAGTCCGATCGTCCTTGAAGGAGAAGGCCATCACTGGACTAACCGCCGCAGCTCTGACGGCGTCGATGGTAATTCCGGAGGTTGCAGAGGCTGCAGGACCTGGAGTCTCACCGTCGCTGAAGAACTTCTTGCTCAGCATTGCTGCCGGTGGAACTGTGGTGGTGGCCATATTGGGGGCTGTGATAGGCGTCTCCAACTTCGATCCGGTCAAGCGTGGTTGA 2832 44.39 MADKKGTEQVVLRILDGEEGVDARNDLTNGSVASVPDFEPKETRSVRCAIPQSVVESSPSHEISRMSSLKPPKIPVGSAVRRPSFARSSFSKPKSRLIEPPCPDGASLAEENAQAKSTSGSPFSSSPKMDSPANIATATSPKESLKSAPITPRTPLVGSTGSEEEDDEEVYKTAELKVKEKSRKKLKRAVLIEWIAFLCITACLISSLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSIKRSKKVNEILNYVTRALAASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEMAERVGGAASSGQLSFRHLKKERDGGNEGKEEVIDVDKLKKMKQEKVSAWTMRGLINVIRSSGLSTISNTIENFKEEEGEQKDKEINSEWEASAAAYQIFRNVAKPGSKYIDEEDLFRFMNKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYIERKSLAHSLNDTKTAIEELNRLASAFVLIVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTIFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIDFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVIVKEIENVNKMKLSLYINHTINFQNYGDRSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYLPWFRQPRGDEEVATSDRDEDFELSQNLPNFRLSTAFLLPWPTSETKIPNSGNSQSFRIISMASTSAVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSNGSLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNFDPVKRG 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3483489 3487681 + Carg12970-RA Car10g00675 155577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00675 943 Pfam Photosystem II reaction centre X protein (PsbX) 906 942 IPR009518 GO:0009523|GO:0015979|GO:0016020
Car10g00675 943 MobiDBLite consensus disorder prediction 53 165 - -
Car10g00675 943 Pfam Mechanosensitive ion channel 542 744 IPR006685 GO:0016020|GO:0055085
Car10g00675 943 MobiDBLite consensus disorder prediction 111 158 - -
Car10g00675 943 MobiDBLite consensus disorder prediction 25 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00675 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101209209 1260.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00894 Car-Chr8:5992536 Car10g00675 Car-Chr10:3483489 0 dispersed
Car10g00675 Car-Chr10:3483489 Car11g01388 Car-Chr11:11354302 4.91E-144 dispersed
Car01g01324 Car-Chr1:11827321 Car10g00675 Car-Chr10:3483489 6.26E-92 transposed
Car01g01323 Car-Chr1:11825413 Car10g00675 Car-Chr10:3483489 5.83E-116 wgd
Car10g00675 Car-Chr10:3483489 Car12g01282 Car-Chr12:11925010 4.74E-38 wgd
Car10g00675 Car-Chr10:3483489 Car05g01326 Car-Chr5:12064661 6.62E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g105 . . . . Bpe01g00608 . . Bma11g00602 Cmo10g00779 Cmo11g00734 . . . . . Cpe04g01033 . . . . . . . . . . . . . . . . . . . Lsi06g00313 . . Cme02g00283 . Blo14g00566 . . . . . . . . . Cma10g00752 Cma11g00720 Car10g00675 . . . . . . . . . . . . . . . . . . Csa01g02964 Chy02g01258 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00782 . 149 532 Mechanosensitive Ion Channel Family AT4G00290 69.3 2.0e-153 539.7
Car16g00778 . 24 748 Mechanosensitive Ion Channel Family AT5G10490 54.0 2.1e-193 672.9
Car05g00491 . 10 730 Mechanosensitive Ion Channel Family AT5G10490 53.1 3.2e-186 649.0
Car12g00181 . 61 667 Mechanosensitive Ion Channel Family AT5G10490 57.7 5.1e-184 641.7
Car05g00491 . 10 710 Mechanosensitive Ion Channel Family AT1G58200 55.3 1.5e-196 683.3
Car12g00181 . 10 632 Mechanosensitive Ion Channel Family AT1G58200 55.5 4.2e-178 622.1
Car20g00632 CCT 50 778 Mechanosensitive Ion Channel Family AT1G53470 54.9 6.6e-200 694.9
Car20g00632 CCT 50 778 Mechanosensitive Ion Channel Family AT1G78610 57.3 4.9e-216 748.4
Car20g00632 CCT 229 778 Mechanosensitive Ion Channel Family AT2G17000 58.6 2.5e-172 603.2
Car11g01388 CCT 270 862 Mechanosensitive Ion Channel Family AT2G17000 52.3 3.3e-172 602.8
Car01g01323 . 1 297 Mechanosensitive Ion Channel Family AT5G19520 51.5 2.2e-79 294.3
Car10g00675 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 2.9e-201 699.1
Car01g01323 . 1 297 Mechanosensitive Ion Channel Family AT5G12080 59.4 6.9e-94 342.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00675 Car_Chr10 FPKM 2.104086 2.836159 0.0 0.531848 4.13908 3.95947 4.863475 0.0 0.0 0.0