Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00675 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTACGGATTTTAGATGGTGAAGAAGGAGTTGATGCAAGGAATGATCTCACTAATGGCTCTGTTGCTTCTGTTCCTGATTTTGAGCCAAAAGAAACTCGGAGTGTTAGGTGCGCAATCCCGCAATCCGTGGTTGAGAGCTCTCCTTCACACGAGATTTCCAGAATGAGTTCACTGAAACCTCCAAAAATTCCTGTCGGATCGGCAGTTCGGCGCCCATCATTTGCTCGATCTTCGTTTTCAAAACCGAAATCAAGGCTAATAGAGCCGCCTTGTCCTGATGGTGCAAGTTTGGCGGAAGAAAATGCTCAAGCAAAATCAACATCTGGTTCACCATTCTCTAGCTCTCCGAAGATGGACTCACCAGCTAATATAGCCACTGCGACTAGTCCTAAAGAATCTTTGAAGTCTGCTCCGATAACTCCTAGAACACCATTGGTTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTCTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCAAGGAAGAAATTGAAAAGAGCAGTTTTAATTGAATGGATTGCATTTTTGTGCATAACAGCATGTTTAATTTCCAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAATGGTGTGTTTTGGTATTAGTCATTTTCTGTGGCCGTTTATTTTCACAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAGAGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTTTTTATTTGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTGTTTGATCAAAGCATCAAAAGATCTAAGAAAGTCAATGAGATTCTGAATTATGTTACACGAGCTCTTGCTGCTTCGCTAATTGGAGCAGGATTATGGCTGGTGAAAACTTTGTTGGTGAAGATACTAGCTGCATCTTTTCAATGCACTCGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTGCGCACTCTATCAGGACCTCCACTGATGGAGATGGCCGAGAGGGTTGGGGGAGCGGCAAGCTCAGGGCAATTGAGCTTCAGGCATTTGAAGAAAGAAAGAGATGGTGGGAATGAGGGGAAGGAAGAAGTGATTGATGTGGATAAACTCAAAAAGATGAAGCAAGAAAAAGTGTCTGCTTGGACCATGAGAGGGCTGATCAATGTTATTAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGGTGAGCAAAAAGACAAGGAGATTAACAGTGAATGGGAAGCAAGTGCTGCAGCTTACCAGATTTTCAGGAACGTTGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAACAAGGAAGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGGGTTGAGACTGGGAAGATAAAGCGAAAAACCCTTAAGAATTGGCTGGTGAACGTTTATATCGAACGGAAGTCACTAGCGCACTCATTGAACGACACCAAAACTGCCATAGAGGAGCTAAACAGGCTTGCTTCTGCATTTGTACTGATTGTTATTATCATTGTATGGCTACTTCTGATGGGTTTCTTGACCACACAAGTACTCGTCTTCATTTCATCACAGCTTCTACTGGTGGTTTTCATGTTTGGTAACACTGCCAAAACTATATTCGAAGCAATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGGTGTGTTGTAGATGGTGTTCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGTGATTCGATCGACTTTTCGGTTGACTTTTCCACATCAATTGAAAGCATTGGAGCCCTAAAAGCAAGAATAAAATCATATCTTGAAAGCAAGCCTCAGTTCTGGCGGCCGAACCACAGCGTGATCGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTGAGTCTATACATCAATCACACCATAAACTTTCAGAACTATGGTGACCGGAGCAGTCGCAGATCGGATCTAGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTGGGCATCAAGTATCATCTGCTACCTCAAGAAGTCCAGCTCAACTATCTCCCATGGTTTCGACAACCTCGCGGAGATGAAGAAGTTGCCACGTCGGATAGAGATGAAGATTTCGAGCTCTCCCAAAATCTCCCCAATTTCCGCCTCTCCACCGCTTTTCTACTTCCTTGGCCCACTTCCGAAACCAAAATCCCCAATTCCGGAAATTCGCAGAGCTTTCGAATCATATCAATGGCTTCCACTTCTGCAGTTTCACTGGCCCTGCCATTGACTAACGCCACCCACAAGAGACTGTCCAACCACGCCTTCTTCAATCCATTGCCTGCTTCTTCTTCTTCGAGGTCTCGCAAGGCCATCGCCGCCGCGCCGACATCTAACGGGAGCCTCGTCGCAGTCCGATCGTCCTTGAAGGAGAAGGCCATCACTGGACTAACCGCCGCAGCTCTGACGGCGTCGATGGTAATTCCGGAGGTTGCAGAGGCTGCAGGACCTGGAGTCTCACCGTCGCTGAAGAACTTCTTGCTCAGCATTGCTGCCGGTGGAACTGTGGTGGTGGCCATATTGGGGGCTGTGATAGGCGTCTCCAACTTCGATCCGGTCAAGCGTGGTTGA 2832 44.39 MADKKGTEQVVLRILDGEEGVDARNDLTNGSVASVPDFEPKETRSVRCAIPQSVVESSPSHEISRMSSLKPPKIPVGSAVRRPSFARSSFSKPKSRLIEPPCPDGASLAEENAQAKSTSGSPFSSSPKMDSPANIATATSPKESLKSAPITPRTPLVGSTGSEEEDDEEVYKTAELKVKEKSRKKLKRAVLIEWIAFLCITACLISSLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSIKRSKKVNEILNYVTRALAASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEMAERVGGAASSGQLSFRHLKKERDGGNEGKEEVIDVDKLKKMKQEKVSAWTMRGLINVIRSSGLSTISNTIENFKEEEGEQKDKEINSEWEASAAAYQIFRNVAKPGSKYIDEEDLFRFMNKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYIERKSLAHSLNDTKTAIEELNRLASAFVLIVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTIFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIDFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVIVKEIENVNKMKLSLYINHTINFQNYGDRSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYLPWFRQPRGDEEVATSDRDEDFELSQNLPNFRLSTAFLLPWPTSETKIPNSGNSQSFRIISMASTSAVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSNGSLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNFDPVKRG 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3483489 3487681 + Carg12970-RA Car10g00675 155577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00675 943 Pfam Photosystem II reaction centre X protein (PsbX) 906 942 IPR009518 GO:0009523|GO:0015979|GO:0016020
Car10g00675 943 MobiDBLite consensus disorder prediction 53 165 - -
Car10g00675 943 Pfam Mechanosensitive ion channel 542 744 IPR006685 GO:0016020|GO:0055085
Car10g00675 943 MobiDBLite consensus disorder prediction 111 158 - -
Car10g00675 943 MobiDBLite consensus disorder prediction 25 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00894 Car-Chr8:5992536 Car10g00675 Car-Chr10:3483489 0 dispersed
Car10g00675 Car-Chr10:3483489 Car11g01388 Car-Chr11:11354302 4.91E-144 dispersed
Car01g01324 Car-Chr1:11827321 Car10g00675 Car-Chr10:3483489 6.26E-92 transposed
Car01g01323 Car-Chr1:11825413 Car10g00675 Car-Chr10:3483489 5.83E-116 wgd
Car10g00675 Car-Chr10:3483489 Car12g01282 Car-Chr12:11925010 4.74E-38 wgd
Car10g00675 Car-Chr10:3483489 Car05g01326 Car-Chr5:12064661 6.62E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00675 K22048 - csv:101209209 1260.74