Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00705 ATGGGAAATACGCATTTCGTAATATATATATATATATTTGTCGCATTATCGGAGCAATATCTAGAAGGGTCTAATTTCTCCGATAAAACCCATTTCCACTGCTGCAGCTGCTTTCCAGTTTCTAGGGTTTATCTTCATCGTTCTTCTATAATCTTCTATCCAATTGGAGCCGCTTCTCCATCTTTATCTTCAGAACGTGAAATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCTTGTGAGAGTCGGGGGTCGGTCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCTTGAAGGAAGACGATATAGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGCAAAGAGAAACCATCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATTGCCGTGGGAGATAACGCGATGTACTCTAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGAC 948 46.84 MGNTHFVIYIYIFVALSEQYLEGSNFSDKTHFHCCSCFPVSRVYLHRSSIIFYPIGAASPSLSSEREMATAQLAGSLISARNLPSFSGLRPSAVKFSPSVALVRVGGRSKRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGSDYIALRASD 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3649030 3651172 + Carg12940-RA Car10g00705 155607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00705 316 ProSitePatterns Chaperonins cpn10 signature. 131 155 IPR018369 GO:0005524|GO:0006457
Car10g00705 316 ProSitePatterns Chaperonins cpn10 signature. 229 253 IPR018369 GO:0005524|GO:0006457
Car10g00705 316 Pfam Chaperonin 10 Kd subunit 131 220 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car10g00705 316 Pfam Chaperonin 10 Kd subunit 229 316 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car10g00705 316 Hamap Co-chaperonin GroES [groES]. 130 222 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01217 Car-Chr7:7431675 Car10g00705 Car-Chr10:3649030 6.31E-166 dispersed
Car10g00705 Car-Chr10:3649030 Car17g00059 Car-Chr17:324703 5.69E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00705 K04078 - csv:101212396 437.573