Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00749 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCTCTCACACCATCTTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAACTTAGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCCGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGGGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGCCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTATTGGCTATCCACTTCGCCCGAGTGAACCTGAATGTGCTTATTATATAAGAACTGGACAATGTAAGTTCGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGCGGTTCTCCTATTTATCCAACCGTACAATCGCCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCGAGGGCGTCGTTCATTCCCAGTCCACGATGGGAAGGCCCTTCCAGTTATGCATCTTTAATATTGCCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAGTGCATTCAATGATCAGCTCGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTCCCTGAGAGACCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCCCCAGATTGTGTCTTGAGTCCTATAGGCCTGCCGTTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTACGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTCGATCACCCTATGGGAATCTTCACATACAATCTCTCAGCAGCAGCAGCAGCAGCAGCATCATCAGCCAACGCCCCAGTTCAGCATTTGTTTGGGACGTCTTCAGGATCAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGCAGGATCTGCAAAACCGAGACGACTATCGATCTCGGAGACGCAAGAGATGCCATCTGACGACGAAAATATCGACACAGAAGGCTGA 1230 47.15 MEYDSGIPMSVTEGHSSALTPSLREGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNIIGYPLRPSEPECAYYIRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWEGPSSYASLILPQGVLSVPGWSAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAAAAAAASSANAPVQHLFGTSSGSTALNLSSEGLVEAGSAKPRRLSISETQEMPSDDENIDTEG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3949481 3954823 - Carg17792-RA Car10g00749 155651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00749 409 MobiDBLite consensus disorder prediction 245 261 - -
Car10g00749 409 MobiDBLite consensus disorder prediction 382 409 - -
Car10g00749 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 337 IPR000571 GO:0046872
Car10g00749 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872
Car10g00749 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 171 IPR000571 GO:0046872
Car10g00749 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
Car10g00749 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 80 IPR000571 GO:0046872
Car10g00749 409 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Car10g00749 409 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Car10g00749 409 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872
Car10g00749 409 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Car10g00749 409 MobiDBLite consensus disorder prediction 245 264 - -
Car10g00749 409 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00749 Car-Chr10:3949481 Car14g01459 Car-Chr14:12187897 8.89E-99 dispersed
Car11g00443 Car-Chr11:2468201 Car10g00749 Car-Chr10:3949481 4.57E-06 dispersed
Car19g00890 Car-Chr19:9191550 Car10g00749 Car-Chr10:3949481 3.14E-06 transposed
Car10g00749 Car-Chr10:3949481 Car11g00844 Car-Chr11:5062614 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4196 PF00642 zf-CCCH 2.80E-10 CL0537 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00749 - - cmos:111461480 848.58