Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00782 ATGGATCAGACGGCTCCTAAGGTTCTAGCTGTTGGTTTGTTCTTGTTCAACGCTGTTGAATGCACCATGGGAGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAGTCATCAGAACACGATGAAAACGCGAGGACAGCCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATCGATGCAGATAAACTTCAGCACGAGTTCAACTCGAATTTTACACCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGGAACAGCTTCTATTCCTTCTGATTCACTTCAAACATATGATGCATTGCATAATCAACACAACGATATAGAAGAACAGGCCGCGATATGCATCCAAACCATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTTCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGACATGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTTCAGGCTCGTGTTCGAGCAAGGCACGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAACAAATTGAAAACCAAGCTCGAGTTCGAGAAATTGAATGGCAAGCAGGAACAAGACAACAGGCTGCCCTGTTCCAGTTTGAACCAGATAAAAACAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTCGACATCAATCTCAAAGACGGAGTGATGATTCGTGAGAACGGATCAGCTGAGGGCAAAAGTAACACTAAATCTCATATACAAACTACTGGCAAGAAAACAAACTTAGTGACTGATCAACCAAACCTCTCGAGCCAAAGAACCGCTGTCTCGCATTCTGATGGATGTGGTTCGTCGTCCCCGACTAAGTCAGCTGGCATTGTAGAGGTATCCAGTGCACAGGTTCAAAAGCTCAAGCATAAACTTGCACCTGAGAGGCCACTTGAACAAGTCAAACCTAAAGTAGATACCGATCCTGGTAGTCAAAACCGAACGGTGAGAAACTCGACTGGCAAAGCGACCGTTGAACCGAAGCCGATATCAAGAGGTGACTCAAAAGCTGCAAAACCCAGATCACAAAACTGA 1149 44.65 MDQTAPKVLAVGLFLFNAVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTATNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSDPGTASIPSDSLQTYDALHNQHNDIEEQAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRIALESETAQQKLQQQIENQARVREIEWQAGTRQQAALFQFEPDKNSWGWNWLERWMAVRPWENRFLDINLKDGVMIRENGSAEGKSNTKSHIQTTGKKTNLVTDQPNLSSQRTAVSHSDGCGSSSPTKSAGIVEVSSAQVQKLKHKLAPERPLEQVKPKVDTDPGSQNRTVRNSTGKATVEPKPISRGDSKAAKPRSQN 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4247644 4256065 + Carg17825-RA Car10g00782 155684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00782 382 MobiDBLite consensus disorder prediction 344 363 - -
Car10g00782 382 MobiDBLite consensus disorder prediction 326 382 - -
Car10g00782 382 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Car10g00782 382 MobiDBLite consensus disorder prediction 263 313 - -
Car10g00782 382 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Car10g00782 382 MobiDBLite consensus disorder prediction 327 341 - -
Car10g00782 382 MobiDBLite consensus disorder prediction 264 313 - -
Car10g00782 382 Pfam IQ calmodulin-binding motif 120 139 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00782 - - - csv:101204117 562.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00782 Car-Chr10:4247644 Car15g00406 Car-Chr15:2112389 3.92E-35 dispersed
Car16g01191 Car-Chr16:10070884 Car10g00782 Car-Chr10:4247644 5.95E-19 dispersed
Car10g00782 Car-Chr10:4247644 Car11g00811 Car-Chr11:4806138 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00308 CCT,ECH 9 187 IQD Protein Family AT3G09710 57.5 3.0e-50 196.8
Car04g01432 CCT,CST,ECH 84 236 IQD Protein Family AT3G09710 53.9 3.7e-40 163.3
Car04g02506 CCT,CST,ECH 1 282 IQD Protein Family AT5G03040 52.6 2.5e-65 246.9
Car06g00308 CCT,ECH 3 187 IQD Protein Family AT5G03040 63.8 8.6e-58 221.9
Car15g00406 CCT,CST,ECH 1 467 IQD Protein Family AT3G52290 53.0 5.5e-99 358.6
Car04g02506 CCT,CST,ECH 1 285 IQD Protein Family AT3G52290 66.7 6.5e-84 308.5
Car06g00308 CCT,ECH 8 187 IQD Protein Family AT3G52290 55.6 2.9e-47 186.8
Car03g01126 CCT,CST,ECH 95 284 IQD Protein Family AT2G26410 50.3 5.6e-37 152.9
Car11g00811 . 1 412 IQD Protein Family AT3G22190 57.2 1.2e-95 347.4
Car10g00782 . 23 333 IQD Protein Family AT3G22190 50.1 8.1e-63 238.4
Car01g01342 . 1 434 IQD Protein Family AT2G26180 59.7 4.0e-115 412.1
Car09g00291 . 1 438 IQD Protein Family AT2G26180 58.4 8.4e-113 404.4
Car16g00380 . 40 223 IQD Protein Family AT2G33990 52.9 2.1e-48 189.9
Car16g00380 . 43 216 IQD Protein Family AT3G15050 61.6 1.6e-53 206.8
Car06g00798 . 1 500 IQD Protein Family AT4G00820 55.7 3.5e-127 452.6
Car06g00798 . 1 500 IQD Protein Family AT1G01110 52.4 1.8e-123 440.3
Car08g00629 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.6 9.4e-74 274.6
Car10g00607 CST 1 376 IQD Protein Family AT3G16490 52.8 2.7e-68 256.5
Car11g00535 CST 1 382 IQD Protein Family AT3G16490 51.4 4.5e-68 255.8
Car17g00704 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 50.5 2.3e-67 253.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00782 Car_Chr10 FPKM 9.672727 7.521771 19.562542 16.854162 14.490773 18.468552 13.706974 12.060859 13.145686 14.067783