Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00825 ATGATGCCTCTTTCACCCAAATTGGGTTCTCCATATCTATGGCTTAGAGAGATCAAATCTGAGGAGAGGGGTTTGTATCTAATCCATTTGTTGCTTACTTGTGCAAACCATGTAGCTGTTGGTAGCCTTGACAGTGCTAATCTTGCCCTTGATCAAATATCACATCTTGCTTCTGCTGATGGTGATACAATGCAGCGCATTGCGGCGTACTTCGCCGAGGCTCTTGCGGATCGAGTCCTCAAGACATGGCCTGGTCTTTACAAGGCCTTTAACTCCACTAAGATACCAATGGTTTCAGAGGAGATTCTTGTTAAGAAACTGTTCTTTGAAATGTTTCCTTTTCTCAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGGGAAAAGATGATTCATATAATTGATCTTAATGGGAATGAAACTGCTCAGTGGCTTGCACTTATGCAAGTATTGAGTGCTAGGCCTGAAGGGCCTCCCCATTTGAGAATCACCGGTGTTCATCCACAGAAGGAGATTCTGGATCAAATGGCTCCTAGGTTGACAGAAGTAGCTGAAAAATTGGATATCCCGTTTCAATTCAATTCCGTTATCAGCCAACTTGAGGATCTCGATATCGAAAAGCTTCGTGTAAAAACCGGGGAGGCTCTGGCTATCAATTCAGTTCTTCAGTTGCACACCCTTTTGGGCTCTGATGAAGTCTTGCAAAAGACATCTTCATCAGCAGCCAAGAGTGCAAATGTAGTTCAATACTCGAGATACTCGTTGAGTGAGTTACTCGACAAGGATTTGGTTAACAGGTGCAGTCCAAGTCCCGACTCGGTTTCCTCATCAGCTCTATCTCAATCTAATGCAACAAAGATCAACAGATTTTTGGATGGATTGTGGAGCTTGACGCCGAAGGTGATGGTTGTGACAGAACAAGATTGTAACCACAATGGTTCAACTCTTATGGAGAGATTACTAGAGGCACTCCACACCTATGCAGCTATTTTTGATTGCTTGGAGTCTAACATGTCAAGAACATCCGTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATCATAGCTTGTGAGGGAGTAGAGAGGAAGGAACGACATGAAAAACACGAGAAATGGTGTCAACGATTCGATATCGCCGGGTTCAGGCATGTGTCTTTGAGTTATTATGGCATGCTGCAGGCACAGAGCCTGTTGCAGGGCTATGGTTGTGATGGTTATAGGATGAAGGAAGAGAATGGTTGTGTGATGATTTGTTGGCAAGATCGTCCATTGTTCACAGTATCAGCTTGGAGGTGCTGTAATAGAATGAATATAGAAACTGCTTTCTCATTATAG 1368 43.42 MMPLSPKLGSPYLWLREIKSEERGLYLIHLLLTCANHVAVGSLDSANLALDQISHLASADGDTMQRIAAYFAEALADRVLKTWPGLYKAFNSTKIPMVSEEILVKKLFFEMFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNGNETAQWLALMQVLSARPEGPPHLRITGVHPQKEILDQMAPRLTEVAEKLDIPFQFNSVISQLEDLDIEKLRVKTGEALAINSVLQLHTLLGSDEVLQKTSSSAAKSANVVQYSRYSLSELLDKDLVNRCSPSPDSVSSSALSQSNATKINRFLDGLWSLTPKVMVVTEQDCNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSVERLKLEKMLFGEEIKNIIACEGVERKERHEKHEKWCQRFDIAGFRHVSLSYYGMLQAQSLLQGYGCDGYRMKEENGCVMICWQDRPLFTVSAWRCCNRMNIETAFSL 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4678782 4680149 + Carg16922-RA Car10g00825 155727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00825 455 ProSiteProfiles GRAS family profile. 18 442 IPR005202 -
Car10g00825 455 Pfam GRAS domain family 27 442 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01146 Car-Chr7:6895184 Car10g00825 Car-Chr10:4678782 2.91E-72 dispersed
Car10g00825 Car-Chr10:4678782 Car18g00804 Car-Chr18:9120096 0 dispersed
Car10g00825 Car-Chr10:4678782 Car11g00741 Car-Chr11:4314453 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4199 PF03514 GRAS 4.10E-139 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00825 - - csv:101215435 764.992