Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car10g00841 | ATGCAGTCAAAGTCAGAAACCAATAATCAGCTCCAATCTGATCCAAATGGTGCTCCATCCACGACTATCTATTATGAACCCTGGTGCAGTTCTATGGGGTACAGTCCTTTTCCGTTACCTGTGGTTGGGGGAAATGCTTCCAGTTCGACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAACGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCTCATTCTGCAGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTCTCATCCAATTTGCCAGCTATGCACGGTGAAAGTCTGACACAGTCGACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGGGGAATGATGGCTTTCTATGGGCATCAGCCCGTGGGCTATCCTATGGTCGGAGCGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAAGAAGTTGATAAAAGCTAGAAAGCCATACCTTCACGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGGAGCAGTGGAGGGCGTTTTGCGAAGAAAAATGAAGCTGATGGAAAGGAGAGTTCTGAACAGCAGCACGGAAGCTCCTTGACAATCAAGGCCTCTGAGTAG | 771 | 46.56 | MQSKSETNNQLQSDPNGAPSTTIYYEPWCSSMGYSPFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSNLPAMHGESLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPVGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKESSEQQHGSSLTIKASE | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4806683 | 4809593 | - | Carg16939-RA | Car10g00841 | 155743 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car10g00841 | 256 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Car10g00841 | 256 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
Car10g00841 | 256 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 178 | 198 | IPR018362 | GO:0003677|GO:0016602 | |
Car10g00841 | 256 | PRINTS | CCAAT-binding transcription factor subunit B signature | 176 | 198 | IPR001289 | GO:0003700|GO:0006355 | |
Car10g00841 | 256 | PRINTS | CCAAT-binding transcription factor subunit B signature | 207 | 230 | IPR001289 | GO:0003700|GO:0006355 | |
Car10g00841 | 256 | MobiDBLite | consensus disorder prediction | 39 | 104 | - | - | |
Car10g00841 | 256 | SMART | cbf3 | 172 | 233 | IPR001289 | GO:0003700|GO:0006355 | |
Car10g00841 | 256 | ProSiteProfiles | NF-YA/HAP2 family profile. | 173 | 233 | IPR001289 | GO:0003700|GO:0006355 | |
Car10g00841 | 256 | MobiDBLite | consensus disorder prediction | 208 | 227 | - | - | |
Car10g00841 | 256 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 34 | 249 | IPR001289 | GO:0003700|GO:0006355 | |
Car10g00841 | 256 | MobiDBLite | consensus disorder prediction | 228 | 242 | - | - | |
Car10g00841 | 256 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 176 | 230 | IPR001289 | GO:0003700|GO:0006355 | |
Car10g00841 | 256 | MobiDBLite | consensus disorder prediction | 84 | 104 | - | - | |
Car10g00841 | 256 | MobiDBLite | consensus disorder prediction | 205 | 256 | - | - | |
Car10g00841 | 256 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 34 | 249 | - | - | |
Car10g00841 | 256 | Gene3D | - | 173 | 235 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car07g00054 | Car-Chr7:347042 | Car10g00841 | Car-Chr10:4806683 | 5.62E-39 | dispersed | |
Car12g01284 | Car-Chr12:11933257 | Car10g00841 | Car-Chr10:4806683 | 6.84E-29 | dispersed | |
Car10g00841 | Car-Chr10:4806683 | Car11g00728 | Car-Chr11:4171458 | 6.29E-161 | wgd | |
Car10g00841 | Car-Chr10:4806683 | Car17g00912 | Car-Chr17:7508377 | 2.61E-47 | wgd | |
Car10g00841 | Car-Chr10:4806683 | Car02g01043 | Car-Chr2:7268882 | 1.91E-98 | wgd | |
Car10g00841 | Car-Chr10:4806683 | Car20g00071 | Car-Chr20:380402 | 1.43E-92 | wgd | |
Car10g00841 | Car-Chr10:4806683 | Car08g00437 | Car-Chr8:2837087 | 8.79E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4201 | PF02045 | CBFB_NFYA | 1.60E-25 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car10g00841 | K08064 | - | csv:101212860 | 429.869 |