Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00841 ATGCAGTCAAAGTCAGAAACCAATAATCAGCTCCAATCTGATCCAAATGGTGCTCCATCCACGACTATCTATTATGAACCCTGGTGCAGTTCTATGGGGTACAGTCCTTTTCCGTTACCTGTGGTTGGGGGAAATGCTTCCAGTTCGACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAACGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCTCATTCTGCAGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTCTCATCCAATTTGCCAGCTATGCACGGTGAAAGTCTGACACAGTCGACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGGGGAATGATGGCTTTCTATGGGCATCAGCCCGTGGGCTATCCTATGGTCGGAGCGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAAGAAGTTGATAAAAGCTAGAAAGCCATACCTTCACGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGGAGCAGTGGAGGGCGTTTTGCGAAGAAAAATGAAGCTGATGGAAAGGAGAGTTCTGAACAGCAGCACGGAAGCTCCTTGACAATCAAGGCCTCTGAGTAG 771 46.56 MQSKSETNNQLQSDPNGAPSTTIYYEPWCSSMGYSPFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSNLPAMHGESLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPVGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKESSEQQHGSSLTIKASE 256
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 4806683 4809593 - Carg16939-RA Car10g00841 155743
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car10g00841 256 MobiDBLite consensus disorder prediction 1 25 - -
Car10g00841 256 MobiDBLite consensus disorder prediction 42 69 - -
Car10g00841 256 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Car10g00841 256 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 MobiDBLite consensus disorder prediction 39 104 - -
Car10g00841 256 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 MobiDBLite consensus disorder prediction 208 227 - -
Car10g00841 256 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 249 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 MobiDBLite consensus disorder prediction 228 242 - -
Car10g00841 256 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 MobiDBLite consensus disorder prediction 84 104 - -
Car10g00841 256 MobiDBLite consensus disorder prediction 205 256 - -
Car10g00841 256 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 34 249 - -
Car10g00841 256 Gene3D - 173 235 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00054 Car-Chr7:347042 Car10g00841 Car-Chr10:4806683 5.62E-39 dispersed
Car12g01284 Car-Chr12:11933257 Car10g00841 Car-Chr10:4806683 6.84E-29 dispersed
Car10g00841 Car-Chr10:4806683 Car11g00728 Car-Chr11:4171458 6.29E-161 wgd
Car10g00841 Car-Chr10:4806683 Car17g00912 Car-Chr17:7508377 2.61E-47 wgd
Car10g00841 Car-Chr10:4806683 Car02g01043 Car-Chr2:7268882 1.91E-98 wgd
Car10g00841 Car-Chr10:4806683 Car20g00071 Car-Chr20:380402 1.43E-92 wgd
Car10g00841 Car-Chr10:4806683 Car08g00437 Car-Chr8:2837087 8.79E-45 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4201 PF02045 CBFB_NFYA 1.60E-25 No_clan Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00841 K08064 - csv:101212860 429.869