Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00841 ATGCAGTCAAAGTCAGAAACCAATAATCAGCTCCAATCTGATCCAAATGGTGCTCCATCCACGACTATCTATTATGAACCCTGGTGCAGTTCTATGGGGTACAGTCCTTTTCCGTTACCTGTGGTTGGGGGAAATGCTTCCAGTTCGACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAACGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCTCATTCTGCAGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTCTCATCCAATTTGCCAGCTATGCACGGTGAAAGTCTGACACAGTCGACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGGGGAATGATGGCTTTCTATGGGCATCAGCCCGTGGGCTATCCTATGGTCGGAGCGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAAGAAGTTGATAAAAGCTAGAAAGCCATACCTTCACGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGGAGCAGTGGAGGGCGTTTTGCGAAGAAAAATGAAGCTGATGGAAAGGAGAGTTCTGAACAGCAGCACGGAAGCTCCTTGACAATCAAGGCCTCTGAGTAG 771 46.56 MQSKSETNNQLQSDPNGAPSTTIYYEPWCSSMGYSPFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSNLPAMHGESLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPVGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKESSEQQHGSSLTIKASE 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4806683 4809593 - Carg16939-RA Car10g00841 155743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00841 256 MobiDBLite consensus disorder prediction 1 25 - -
Car10g00841 256 MobiDBLite consensus disorder prediction 42 69 - -
Car10g00841 256 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Car10g00841 256 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 MobiDBLite consensus disorder prediction 39 104 - -
Car10g00841 256 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 MobiDBLite consensus disorder prediction 208 227 - -
Car10g00841 256 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 249 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 MobiDBLite consensus disorder prediction 228 242 - -
Car10g00841 256 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700|GO:0006355
Car10g00841 256 MobiDBLite consensus disorder prediction 84 104 - -
Car10g00841 256 MobiDBLite consensus disorder prediction 205 256 - -
Car10g00841 256 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 34 249 - -
Car10g00841 256 Gene3D - 173 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00841 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101212860 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00054 Car-Chr7:347042 Car10g00841 Car-Chr10:4806683 5.62E-39 dispersed
Car12g01284 Car-Chr12:11933257 Car10g00841 Car-Chr10:4806683 6.84E-29 dispersed
Car10g00841 Car-Chr10:4806683 Car11g00728 Car-Chr11:4171458 6.29E-161 wgd
Car10g00841 Car-Chr10:4806683 Car17g00912 Car-Chr17:7508377 2.61E-47 wgd
Car10g00841 Car-Chr10:4806683 Car02g01043 Car-Chr2:7268882 1.91E-98 wgd
Car10g00841 Car-Chr10:4806683 Car20g00071 Car-Chr20:380402 1.43E-92 wgd
Car10g00841 Car-Chr10:4806683 Car08g00437 Car-Chr8:2837087 8.79E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car20g00071 CST 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.7 1.1e-55 214.2
Car02g01043 CST 18 269 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 3.1e-55 212.6
Car10g00841 . 23 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 1.6e-48 190.3
Car02g01043 CST 105 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.7 1.9e-50 196.8
Car20g00071 CST 105 343 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.2 3.4e-47 186.0
Car10g00841 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 5.5e-45 178.7
Car03g01306 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.7 5.1e-49 191.4
Car07g00054 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.2 1.7e-47 186.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4201 PF02045 CBFB_NFYA 1.60E-25 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00841 Car_Chr10 FPKM 5.244074 5.636815 6.232321 6.556128 4.286576 4.221355 5.072807 6.174993 5.112119 5.9422